ElliotXie / CASSIA Star 33 Code Issues Pull requests Discussions CASSIA: A multiagent llm based single cell Annottaion framework bioinformatics rna-seq annotation multiagent-systems single-cell singlecell cell-annotation singlecellgenomics ai4science llm prompt-engineering singlecell-data-analysis retrieved-augmented-generation Updated May 18, 2025 Python
cliffren / PENCIL Star 28 Code Issues Pull requests PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously. data-mining bioinformatics-tool singlecell-data-analysis Updated Jan 21, 2024 Python
dkleftogi / singleCellClassification Star 4 Code Issues Pull requests Single cell classification and feature engineering using DREMI scores machine cytof singlecell-data-analysis Updated Apr 19, 2024 R
Mengxicici / streamlit_for_infinite_TierCluster Star 0 Code Issues Pull requests phenotyping interactive-visualizations streamlit-webapp singlecell-data-analysis Updated Feb 19, 2025 Python
dkleftogi / immuneReconstitution_RRMS Star 0 Code Issues Pull requests Describe immune reconstitution in Multiple Sclerosis using mass cytometry data machine-learning cytof immune-system singlecell-data-analysis Updated Mar 28, 2025 R
tunabirgun / single_cell_rna_sequencing Star 0 Code Issues Pull requests Workflows for sc/snRNAseq from count data. r scrna-seq transcriptomics umap snrna-seq singlecell-data-analysis Updated Dec 19, 2024 R