memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
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Updated
Oct 1, 2024 - C++
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics
Fast and space-efficient taxonomic classification of long reads
F# library for accessing and manipulating bioinformatic datasets.
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Rapid determination of appropriate reference genomes.
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
NCBI Genome downloader
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
Mapping RefSeq RNA to OrthoDB (Under Development)
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