qiime
Here are 26 public repositories matching this topic...
Tools for phylogenetic data analysis including visualization and cluster-computing support.
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Aug 10, 2018 - Python
Streamlit app forked for debugging purposes
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Mar 30, 2023 - Python
A repository containing a demo microbiome workflow for R and Python
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Apr 11, 2018 - Jupyter Notebook
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Feb 10, 2019 - Jupyter Notebook
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
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Aug 21, 2020 - Shell
Tutorials on microbiome analysis using the Quantitative Insights Into Microbial Ecology (QIIME) platform
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Jul 29, 2017 - Shell
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Nov 21, 2017 - Shell
This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequen…
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Aug 14, 2018 - Perl
The source code for the MIND pipeline paper
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Aug 31, 2023 - HTML
Analysis of DNA sequencing data obtained from ancient feces of Huecoids and Saladoids, two cultures that lived in the Caribbean before the arrival of Europeans to the region.
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Oct 11, 2023
Bash scripts for running QIIME 1.9 and a Snakemake workflow to automate it using singularity container images.
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Jun 20, 2023 - Shell
Bioinformatics pipeline for analysis of diatom sequenced data
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Jul 4, 2019 - Jupyter Notebook
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