BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
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Updated
Aug 15, 2023 - Jupyter Notebook
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
EasyPubMed is an extension to make new PubMed easy to use
Findpapers: A tool for helping researchers who are looking for related works
I, Librarian - open-source version of a PDF managing SaaS.
NLP framework in python for entity recognition and relationship extraction
ReCiter: an enterprise open source author disambiguation system for academic institutions
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
A high performance bibliographic information service: https://biblio-glutton.readthedocs.io
SciFive: a text-text transformer model for biomedical literature
PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing all article data (title, abstract, authors, affiliations, etc)
A Python package to download full article PDFs from OA publications
ReCiter Publication Manager - a user interface for providing feedback on articles
Sample code and explanations for doing basic text mining tasks in R
R Interface to Europe PMC RESTful Web Service
Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.
Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar
Add a description, image, and links to the pubmed topic page so that developers can more easily learn about it.
To associate your repository with the pubmed topic, visit your repo's landing page and select "manage topics."