Converter from DTASelect to pepXML formats
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Updated
Dec 19, 2018 - Java
Converter from DTASelect to pepXML formats
List of online databases and resources for Mycobacterium Tuberculosis
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
Repository for proteomic data analysis used in the publication "Disruption of acetyl-lysine turnover in muscle mitochondria promotes insulin resistance and redox stress without overt respiratory dysfunction."
Repository for proteomic data analysis used in the publication "Extreme Acetylation of the Cardiac Mitochondrial Proteome Does Not Promote Heart Failure."
A python-based program to optimise mass spectrometer collision energies for peptides in HDX-MS experiments
DeltaMass: view and interrogate open proteomics search data
Converter from Census TMT output file to the input of MSstatsTMT
Prediction of molecular subtypes of Breast Cancer based on TCGA proteomic data
QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output
PACOM (Proteomics Assay COMparator) is a Java stand alone tool for visualize and compare large proteomics datasets
Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
Custom analysis of in vitro circadian proteomics and phosphoproteomics using multiple sets of 10plex TMT with two genotypes
Feature extraction from .pdb files
Data for proteomics data analysis course
Smart, light, easy and robust Thermo RAW files backup program
protGear is a package for protein microarray data processing just before the main analysis.
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