Genomic Data Retrieval with R
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
Genome wide orthology inference and dNdS estimation
Matrix dissimilarity from the differences of Moments and sparsity
Tools for Batch Effects Diagnostics and Correction
Construction, quantification, and visualization of proteoform families
An alignment-independent tool for the study of pathogen sequence diversity
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
Scripts used for the phosho data analysis
Sharing some useful biological data that I generated during my PhD.
Proteome Discoverer Result File Reader
Hydrophobicity of the human proteome
Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.
It assigns the phosphorylation site in protein
This is now the main repository. A few older issues are still tracked on gitlab for reference.
This repository is to store the used dataset for publications related to UNIQmin
CWL descriptions for FragPipe Proteomics Pipline
Add a description, image, and links to the proteome topic page so that developers can more easily learn about it.
To associate your repository with the proteome topic, visit your repo's landing page and select "manage topics."