Flexible protein alignment using Protein Units
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Updated
Jan 10, 2019 - Python
Flexible protein alignment using Protein Units
Protein alignment using gap penalty traceback with the Blosum62 Matrix
For viewing, analyzing, and generating figures of protein sequence alignments.
FASTA Alignment search for BsaI and BsmBI restriction sites in the ORF6 protein to verify assertions made by Bruttel, et. al. in "Endonuclease fingerprint indicates a synthetic origin of SARS-CoV-2."
MutFold | Human breast cancer associated mutant protein structure prediction and alignment application
Protein Alignment and Detection Interface
Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc
Benchmark the performance of sequence alignment workflows
Open-source usearch
Implementation of the Combinatorial Extension (cealign) algorithm to align protein structures
miniprot protein alignment analyzer
miniprot protein analyzer
protein alignment gem from alignment to graphs
maf alignments from protein to genome alignments using awk
compleasm genome coverage analysis using awk
intergenic region analyzer from protein alignments to draft genomes.
stitching coding regions from exon alignments for the protein to genome alignments.
formatting paf output alignments and plotting the paf alignments stats
genome and transcriptome alignment extraction
maf to panache and extracting all snps and pangenome specific information.
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