Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Python scripts for CT(comparative transcriptomics), PT(phylotranscriptomics) and CG(comparative genomics).

oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ages per orthologous group) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

JUst a SEquence toolKIt for Transcriptomics, provides convenient visual interactive operations for related analysis