🚿A Tidy Tool for Phylogenetic Tree Data Manipulation

Fungal Validation and Identification Pipeline

A feature rich and easy to use phylogenetic tree editor

A pipeline to construct phylogenetic tree using BUSCOs

web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.

Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)

Draw a phylogenetic tree, along with a table of metadata

Bird (avian) phylogenetic tree with bird pictures

Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.

Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017

A tool for phlyo tree, a phylogenetic tree construction software.

A stand-alone tool for evaluating simple statistics of orthologs

Script for creating a tANI distance matrix for use in phylogenetic reconstruction.

A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw

Script for sorting FASTA sequences by clade in a given tree topology.

[Python] Construction of SARS-CoV-2 Phylogenetic Tree.

A Nextflow pipeline to generate a phylogenetic tree from SKA alignment

Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

A pipeline for MSA and phylogenetic tree generation from a fasta file of neucleotide sequences

Example files for Benin NGS capacity building project