A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
pipeline genomics exome-pipeline illumina nvidia-gpu cohort-analysis gatk4 snakemake-pipeline gatk-bestpractices nvidia-clara-parabricks
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Updated
Jan 13, 2023 - Python