⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling
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Updated
Feb 21, 2023 - R
⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling
How to set up and run the Miniasm assembler.
Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.
Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
An accurate small variant representation unification method for multiple sequencing platforms
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
A tool for Nanopore Amplicon Real-Time (NART) analysis.
VIral GEnome ASsembly pipelines for WGS
NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes
PuntSeq - Chasing the microbial diversity of Cambridge's freshwater
Identify and characterize repeat expansions in long read data
Official implementation of paper "Expanding the Molecular Alphabet of DNA-Based Data Storage Systems with Nanopore Readouts" (Nano Letters)
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Viral genome assembly pipeline for WGS using ONT
Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.
Dorado-basecalled reads improve old bacterial genome assembly
#NoJobTooSmall Contract / ForHire job shop for laboratory tool building / developmental work in the nanoscale realm as well as nanofabrication mfg engineering
Code for STORK. Rapid Nanopore Sequencing–Based Screen for Aneuploidy in Reproductive Care. “Copyright © 2022 The Trustees of Columbia University in the City of New York. All Rights Reserved.”
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