Quantify the colonization behaviours on surfaces for different bacterial strains
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Updated
May 7, 2021 - Mathematica
Quantify the colonization behaviours on surfaces for different bacterial strains
convolutional-relational neural network architectures for segmentation of electron micrographs
This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
This is a converter written in Java that translates an XSD microscopy metadata schema into JSON
🧪 Reproducing the concept of Confocal Laser Scanning Microscope. Using Arduino and easily found materials. Generating images in Grayscale just for fun.
Python code that I used in my blog posts on the Zarr file format.
Deep Zoom Plate Viewer for microscopy images
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
Scientific software for analysis of confluent cell dynamics.
Electron wrapped, stand-alone version of Micro-Meta App, microscopy metadata for the real world!
Example workflows for image processing, segmentation and analysis. Stitching and alignment functions also implemented.
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
Nuclear Morphology and Chromatin Organization Features
4DN-BINA-OME-QUAREP Microscopy Glossary
This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.
This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.
Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper
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