Rapid comparison and dereplication of genomes
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Dec 19, 2024 - Python
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microbial-genomes
Here are 6 public repositories matching this topic...
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
alignment sequence-search microbial-genomes sequence-alignment bacterial-database bacterial-genomes large-scale-dataset prokaryotic-genomes lexichash
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Dec 18, 2024 - Go
Micro 612 genomics workshop
visualization workshop genomics ngs comparative-genomics microbial-genomes microbial-bioinformatics-workshop bioinformatics-tutorials
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Apr 23, 2021 - Shell
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
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Feb 22, 2023 - JavaScript
R package and vignette to denoise metagenomic cell-free DNA sequencing data.
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Nov 5, 2019 - Roff
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
bioinformatics genomics bioinformatics-pipeline microbiology microbial-genomes tuberculosis genomic-data-analysis genomics-visualization mycobacterium-bovis mycobacterium-tuberculosis-complex bacterial bacterial-genomes mycobacterium-tuberculosis genomic-data-science bacterial-genome-analysis mycobacterium-orygis
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Apr 26, 2022 - R
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