Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.

ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.

C++/CUDA Implementation of the most popular reaction-diffusion dynamics

EPIDEMIC is an easy-to-run Matlab/Octave educational toolkit for epidemiological analysis.

Awesome-spatial-temporal-scientific-machine-learning-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included.

Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19, com especial interesse no Estado do RJ.

Epidemic spatial and temporal model setup and simulation. Focusing on state of the art epidemiology models such as universal differential equations, epidemiology-informed deep learning models. Part of Mathepia.jl

Spatial and temporal epidemiology data mining flow tools including data processing and analysis, model setup and simulation, inference and evaluation. Focusing on state-of-the-art methods such as universal differential equations, epidemiology-informed deep learning methods.

Physically Based Modelling of Cirdadian Glucose Dynamics

Exploring biological networks with javascript

Computational models for epithelial transport along the nephron.

A Python package for representing reaction networks and simulating their behaviors

Tutorials on math epidemiology and epidemiology informed deep learning methods

epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.

3MC - African Mathematical School on Mathematical Modeling in Biology

Analysis script for "Neutral competition boosts chaos in food webs"

R code for Allman And Rhodes' book "Mathematical Models in Biology: An Introduction"

Code base for honours thesis