A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation/classification/clustering/forecasting/anomaly detection/cleaning on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values

Imputation of missing values in tables.

A unified multi-task time series model.

Multivariate Imputation by Chained Equations

MOMENT: A Family of Open Time-series Foundation Models

Data imputations library to preprocess datasets with missing data

The official PyTorch implementation of the paper "SAITS: Self-Attention-based Imputation for Time Series". A fast and state-of-the-art (SOTA) deep-learning neural network model for efficient time-series imputation (impute multivariate incomplete time series containing NaN missing data/values with machine learning). https://arxiv.org/abs/2202.08516

Awesome Deep Learning for Time-Series Imputation, including a must-read paper list about applying neural networks to impute incomplete time series containing NaN missing values/data

(Python, R, C/C++) Isolation Forest and variations such as SCiForest and EIF, with some additions (outlier detection + similarity + NA imputation)

Codebook from my GWAS cookbook

HandySpark - bringing pandas-like capabilities to Spark dataframes

a Python toolbox loads 172 public time series datasets for machine/deep learning with a single line of code. Datasets from multiple domains including healthcare, financial, power, traffic, weather, and etc.

A framework for prototyping and benchmarking imputation methods

CRAN R Package: Time Series Missing Value Imputation

Official repository for the paper "Filling the G_ap_s: Multivariate Time Series Imputation by Graph Neural Networks" (ICLR 2022)

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

Beta Machine Learning Toolkit

Accurate and robust imputation of scRNA-seq data

Making imputation easy

Race and ethnicity Imputation from Disease history with Deep LEarning