Z-stack Depth Colorcode ImageJ FIJI plugin
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Feb 17, 2021 - Java
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imagej-plugin
Here are 24 public repositories matching this topic...
ExTrack MLE for diffusive noisy single-particle tracks
python image-analysis microscopy diffusion spt maximum-likelihood-estimation single-particle-tracking imagej-plugin
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May 6, 2025 - Jupyter Notebook
This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.
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Aug 28, 2020 - Java
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
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Mar 25, 2024 - Java
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
imagej-plugins fluorescence-microscopy-imaging time-lapse-imaging cilia cilium ciliaq-workflow imagej-plugin confocal-images primary-cilia cilium-length ciliary-fluorescence
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Dec 3, 2024 - Java
An ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.
ciliary-motion sperm-tracking imagej-plugin flagella sperm-steering spermq-analysis flagellar-beat ciliary-beat
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Jan 28, 2024 - Java
A toolbox to analyze spherical and filamentous objects in multifocal images with high precision.
java sperm fluid-dynamics particle-tracking particle-imaging-velocimetry high-speed-imaging sperm-tracking imagej-plugin spermq-mf multifocal-images flagella 3d-particle-tracking sperm-steering flagellar-beat 3d-particle-imaging-velocimetry
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Aug 9, 2021 - MATLAB
😎 Awesome lists about ImageJ Plugins!
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Nov 10, 2021
A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.
image-analysis adipose-tissue immunohistochemical-images fluorescence-microscopy-imaging cell-biology droplets-detection adipocyte-differentiation droplet-analysis imagej-plugin adipose-tissue-segmentation lipid-droplets adipocytes
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Mar 12, 2023
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
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May 1, 2025 - Python
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Nov 7, 2023 - Java
Fiji/ImageJ plugin to annotate a labeled image
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Nov 17, 2023 - Java
Fiji/ImageJ plugin to help measuring linear distances.
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Feb 1, 2023 - Python
ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.
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Jun 28, 2024 - ImageJ Macro
ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders
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Sep 11, 2023 - Java
Mageek is an ImageJ Java plugin to batch process microscope images
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Mar 16, 2022 - Java
ImageJ plugin that converts regions from label maps into polygons
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May 27, 2023 - Java
An ImageJ plugin to analyze pixel intensity oscillations in time-lapse 2D images. For example, this allows to characterize the ciliary beat of multi-ciliated cells in time-lapse images acquired with a bright-field or phase-contrast microscope.
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Sep 14, 2023 - Java
An ImageJ plugin to prepare images for analysis using CiliaQ.
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Sep 21, 2023 - Java
ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.
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Nov 4, 2021 - Java
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