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orangeSi / GSSplayground

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Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

visualization svg bioinformatics vcf depth snp comparative-genomics bam synteny transcriptomics genomes sv read-mapping long-reads genome-viewer crosslink genecluster structure-variation indel igv-like
  • Updated Jul 12, 2020
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