A Python toolbox for quantitative, reproducible flow cytometry analysis

(Legacy project) A modular laboratory experiment management suite, predecessor to qudi-core.

Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)

Self-supervised models for encoding protein localization patterns from microscopy images

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

The Fluorescent Protein Database

An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

🥎 An example of fluorescence shader in URP.

An interactive image processing program for biologists written in Python.

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy (Sample data: https://gitlab.peulen.xyz/skf/tttr-data)

GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph

Utilities for pre-processing emission-excitation-matrix (EEM).

Modeling and Bayesian analysis of fluorescence and absorbance assays.

Burst analysis software for smFRET. **Moved to OpenSMFS organization**

[MICCAI 2023] This is the official code for the paper "A Feature-Driven Richardson-Lucy Deconvolution Network"

Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.

Global analysis platform for fluorescence data