edna
Here are 35 public repositories matching this topic...
Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding
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May 16, 2018 - R
Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)
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Mar 7, 2019 - R
Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes
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Jun 5, 2019 - R
This is a Jupyter Notebook to make phylogenetic trees with the Open Tree of Life from a list of taxa such as those from Anacapa output (CALeDNA format)
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Jun 17, 2020 - Jupyter Notebook
A collection of singularity recipies for bioinformatic pipelines.
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Jan 20, 2021 - Shell
repository of data examples for the R package metabaR
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Mar 29, 2022
Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
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Jul 6, 2022 - R
Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"
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Aug 9, 2022 - R
Environmental DNA reflects common mitochondrial haplotypic variation
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Aug 12, 2022 - R
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
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Jan 17, 2023 - HTML
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
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Jan 26, 2023 - Python
"An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies"
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Feb 13, 2023 - Shell
A set of functions for filtering erroneous sequences in eDNA metabarcoding data
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Mar 30, 2023 - R
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
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May 24, 2023
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