Bioinformatics containers

Open source bioinformatics and computational biology toolbox written in F#. This is the core package containing type models and parsers/writers.

BioContainers specifications

This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.

Go / Golang Bioinformatics Library

Docker container for bioinformatics tools and pipelines

docker container for running NCI GDC gdc-client

A framework for semi-automated analysis of Amplicon Sequencing data

Reproducible evaluation of short read mappers

Dockerfiles used to create the docker images containing most of the software we use. One image, all software.

Bioinformatic pipeline to do QC oh Hi-C reads and manual curation with the contact matrices.

Integrated tool for prediction of potential neoantigens - A fork from our original publication @ neoanthill/neoANT-HILL

A docker container for biomedinfo/sugar.

NCBI BLAST+ wrapper for WashU MGI cluster

Docker image to run fastSTRUCTURE (Raj et al. 2014)

A generic framework for bioinfmatics programming.

Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.