Large genome reassembly based on Hi-C data, continuation of GRAAL

Simple library/pipeline to generate and handle Hi-C data.

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Metagenomic binning based on Hi-C data

Simple 3C milling simulator with path generation module.

Local, normalization-free contact map binning

Step by step command-line tutorial to process Hi-C data

Tool for chromatin 3D structure reconstruction from 3C experimental data. Improvement of ShRec3D.

Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…

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Yet Another Hi-C Pipeline

The Halo 3C Collector is a powershell script which listens for Halo 3C environment sensor heartbeat data, pushes the data into InfluxDB and can also send notifications via SMTP or Teams.

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