[Simulation question]: Seeking Help with TOPASChemistry_Extended Reaction Configuration Errors #71
Unanswered
Edgarchen666
asked this question in
Simulation-question
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
Simulation question
Dear TOPAS Community/Support Team,
I am encountering persistent errors while configuring background reactions in the TOPASChemistry_Extended reaction list (using the IRTCummulative example) and would greatly appreciate any guidance.
I have verified spelling, units, and parameter hierarchies against the documentation but remain unresolved. Any examples, debugging tips, or insights would be invaluable.
Thank you for your time and expertise!
Issue Summary:
When adding reactions such as belows, I receive the following errors:
"TOPAS is exiting due to an error in Chemistry configuration.
Parameter: Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/ReactionRate
--- Molecule: dreaction was not found in database"
"Topas is exiting due to a serious error.
Expected the parameter named: Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/ReactionRate to have unit category: perMolarConcentration perTime
But instead found unit category: perTime"
Below are snippets of the problematic configurations:
sv:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/Products = 1 "Dyhydrogen"
d:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/ReactionRate = 1e10 /M/s
i:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/ReactionType = 6
s:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/ScavengingModel = "ExponentialSingleFactor"
b:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/hydroxyl/CompatibleWithStepByStep = "False"
sv:Ch/TOPASChemistry/BackgroundReaction/SolvatedElectron/Oxygen/Products = 1 "Superoxideanion"
d:Ch/TOPASChemistry/BackgroundReaction/SolvatedElectron/Oxygen/ReactionRate = 1.74e10 /M/s
d:Ch/TOPASChemistry/BackgroundReaction/SolvatedElectron/Oxygen/Concentration = 25e-6 M
s:Ch/TOPASChemistry/BackgroundReaction/SolvatedElectron/Oxygen/ScavengingModel = "ExponentialSingleFactor"
b:Ch/TOPASChemistry/BackgroundReaction/SolvatedElectron/Oxygen/CompatibleWithStepByStep = "False"
sv:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/Oxygen/Products = 1 "Hydroperoxy"
d:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/Oxygen/ReactionRate = 2.1e10 /M/s
d:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/Oxygen/Concentration = 25e-6 M
s:Ch/TOPASChemistry/BackgroundReaction/Hydrogen/Oxygen/ScavengingModel = "ExponentialSingleFactor"
TOPAS-nBio category
Geometry
Code of Conduct
Attestation
Beta Was this translation helpful? Give feedback.
All reactions