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setup.py
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#!/usr/bin/env python3
try:
from setuptools import setup, find_packages
except ImportError:
from distutils.core import setup
DESCRIPTION = 'Plumology - Biased molecular dynamics analysis'
LONG_DESCRIPTION = '''
Plumology allows the analysis of biased molecular dynamics data,
in particular output from PLUMED. It features:
- Reading plumed output files
- Creating weighted probability distributions, WHAM
- An implementation of a self-organising-map
- Efficient storage and retrieval of data via HDF5
- Wrappers for common backcalculation of experimental values
- Convergence analysis for Metadynamics
- Comparing data from different simulations
- Calculating experimental data RMSDs
- A diverse set of flexible plotting routines
'''
DISTNAME = 'plumology'
MAINTAINER = 'Thomas Löhr'
MAINTAINER_EMAIL = 'thomas.loehr@tum.de'
DOWNLOAD_URL = 'https://github.com/tlhr/plumology'
URL = 'https://github.com/tlhr/plumology'
LICENSE = 'MIT'
VERSION = '0.0.1'
setup(
name=DISTNAME,
author=MAINTAINER,
author_email=MAINTAINER_EMAIL,
maintainer=MAINTAINER,
maintainer_email=MAINTAINER_EMAIL,
description=DESCRIPTION,
long_description=LONG_DESCRIPTION,
license=LICENSE,
url=URL,
version=VERSION,
download_url=DOWNLOAD_URL,
install_requires=['numpy', 'pandas', 'matplotlib', 'scipy', 'sklearn',
'h5py', 'pyemma', 'bokeh'],
packages=find_packages(),
classifiers=[
'Intended Audience :: Science/Research',
'Programming Language :: Python :: 3.5',
'Operating System :: POSIX',
'Operating System :: Unix',
'Operating System :: MacOS'
]
)