Discussions

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  Can we run differential kinetics test after stochastic or dynamical mode?

  denvercal1234GitHub asked May 5, 2023 in Q&A · Unanswered

  

  

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  How to explore the differentiation relationships between samples from 2 different tissues?

  denvercal1234GitHub asked May 4, 2023 in Q&A · Unanswered

  

  

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  Best way to subset when using scvelo on Seurat embeddings

  Leena-Abdullah asked Apr 24, 2023 in Q&A · Unanswered

  

  

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  Precomputed or new PCA on subsetted data

  dravichandar asked Apr 17, 2023 in Q&A · Unanswered

  

  

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  How do I save this image to the specified path?

  wt2018ttt asked Mar 29, 2023 in Q&A · Unanswered

  

  

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  scvelo.pl.scatter split by group

  enhancement

  joe-jhou2 asked Mar 15, 2023 in Q&A · Unanswered

  

  

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  About scv.tl.paga function ，we set root and end on this function, bu we could not acquire a suitable paga graph

  zhangshouwei309194 asked Feb 27, 2023 in Q&A · Unanswered

  

  

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  Problems combining loom file with my adata object

  Pawan291 started Feb 21, 2023 in General

  

  

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  how to show gene names from my list in the plot made by scv.pl.heatmap?

  lwf20 asked Feb 21, 2023 in Q&A · Unanswered

  

  

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  Get more from differential kinetic testing

  dawe asked Feb 7, 2023 in Q&A · Unanswered

  

  

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  Problems with figures generated by scv.pl.velocity_graph(adata)

  ETAOIK asked Feb 1, 2023 in Q&A · Unanswered

  

  

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  scv.pl.paga：What does the dotted line mean

  enhancement

  yang-qingxin asked Jan 31, 2023 in Q&A · Unanswered

  

  

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  velocity stream

  fenghuijian asked Jan 20, 2023 in Q&A · Unanswered

  

  

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  Determing rank_velocity_genes with negative mean velocities

  enhancement

  kzimmer1 asked Jan 12, 2023 in Q&A · Unanswered

  

  

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  Does meiosis have some impact on RNA velocity?

  jiangpuxuan asked Apr 12, 2022 in Q&A · Unanswered

  

  

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  Does a low unspliced proportion have an impact on scvelo analysis?

  jiangpuxuan asked Apr 23, 2022 in Q&A · Answered

  

  

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  Different velocity trajectories between stochastic and dynamic models

  DaianeH started Dec 12, 2022 in General

  

  

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  Cannot compute velocities (or even plot UMAP)

  DaianeH asked Dec 1, 2022 in Q&A · Unanswered

  

  

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  How to choose embeddings for scvelo

  AlinaKurjan asked Nov 10, 2022 in Q&A · Unanswered

  

  

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  How do I fix the coordinates at a ratio of 1:1？

  plotting Plotting-related

  EternalEnvy10 asked Nov 1, 2022 in Q&A · Unanswered

  

  

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  scv.pl.velocity plot blurry

  ccshao asked Oct 26, 2020 in Q&A · Unanswered

  

  

  

  

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  Which n_neighbors shall we optimize in scVelo?

  hyjforesight asked Nov 18, 2021 in Q&A · Answered

  

  

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  high % of unspliced

  chrismahony asked Mar 24, 2022 in Q&A · Answered

  

  

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  Length and Width of arrow indicating direction

  galaxyeee asked Aug 11, 2022 in Q&A · Answered

  

  

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  Dropping group of cells to improve pseudotime projection

  mitchTwoTimes started Jul 20, 2022 in General

  

  

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