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A question about the documents of Multigrate #25

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CocoGzh opened this issue Aug 9, 2023 · 2 comments
Open

A question about the documents of Multigrate #25

CocoGzh opened this issue Aug 9, 2023 · 2 comments

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@CocoGzh
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CocoGzh commented Aug 9, 2023

Hi!
I am very interested in your proposed method. However, when I performed the document of URL "https://multigrate.readthedocs.io/en/latest/notebooks/trimodal_pp.html", sth. was wrong. Could you provide the "cellttype_harmonize.json" file?
Thanks!

@CocoGzh
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CocoGzh commented Aug 9, 2023

I find it in URL "https://docs.scarches.org/en/latest/multigrate.html"
Thanks!

@CocoGzh
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CocoGzh commented Aug 9, 2023

Another question. After installing the multigrate package on either linux or windows, I get the following error when I import Multigrate package.

Windows:
File "C:\Users\user\anaconda3\envs\py310\lib\site-packages\scvi_compat.py", line 4, in Literal
raise DeprecationWarning("This class is deprecated, please import from typing")
DeprecationWarning: This class is deprecated, please import from typing

Linux:
File "/home/user/anaconda3/envs/py310/lib/python3.10/site-packages/scvi/_compat
.py",line 4,in Literal
raise DeprecationWarning("This class is deprecated,please import from typin
g")
DeprecationWarning:This class is deprecated,please import from typing

The version of key pacakages are:
scvi-tools 1.0.2
Multigrate 0.0.2

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