diff --git a/README.md b/README.md index 13b287a..c7ec0ac 100644 --- a/README.md +++ b/README.md @@ -2,73 +2,70 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-12-16 12:11:31 UTC +2024-12-17 12:11:38 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 795 | 19 | 73 | 191 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 797 | 19 | 73 | 191 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | | [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 104 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 21 | 47 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 21 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12343592364) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12343688075) | bf27c9 | | [theislab/scib](https://github.com/theislab/scib) | 317 | 14 | 41 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) | d35727 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 282 | 14 | 36 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12278791230) | 7717a0 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 244 | 5 | 43 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12244570924) | 419f2b | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 244 | 5 | 43 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 283 | 14 | 36 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12278791230) | 7717a0 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 244 | 5 | 44 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12244570924) | 419f2b | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 244 | 5 | 44 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 154 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013) | 8358a4 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 36 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12343604461) [![](https://github.com/theislab/moscot/workflows/Test%20examples/badge.svg)](https://github.com/theislab/moscot/actions/runs/12300902819) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12343530039) | 29764d | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 130 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/12370218238) | 7d8729 | +| [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 36 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) | 29764d | | [theislab/ncem](https://github.com/theislab/ncem) | 104 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/DRVI](https://github.com/theislab/DRVI) | 33 | 1 | 2 | 3 | [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/12335999301) | fdc2eb | -| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12344247984) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12364597954) | 1ec08e | | [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12336008817) | c721ba | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | -| [theislab/multigrate](https://github.com/theislab/multigrate) | 16 | 3 | 7 | 6 | [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/12335994639) | fd6c1a | | [theislab/regvelo](https://github.com/theislab/regvelo) | 12 | 1 | 2 | 0 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | | [theislab/regvelo](https://github.com/theislab/regvelo) | 12 | 1 | 2 | 0 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12252673511) | bf75f1 | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12368693074) | f5f0a2 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 9 | 1 | 1 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 9 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12343645007) | 210765 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 7 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12354253700) | 320930 | | [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 18 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12333190869) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12336027705) | 80acdf | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12352213121) | 7423b9 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12372596025) | 6a1b33 | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12336009745) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | -| [theislab/troutpy](https://github.com/theislab/troutpy) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12230881448) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12335995037) | cd7505 | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1418 | 30 | 21 | 465 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1419 | 30 | 21 | 466 | | [theislab/scarches](https://github.com/theislab/scarches) | 341 | 12 | 53 | 52 | -| [theislab/scgen](https://github.com/theislab/scgen) | 274 | 9 | 28 | 56 | +| [theislab/scgen](https://github.com/theislab/scgen) | 276 | 9 | 28 | 56 | | [theislab/dca](https://github.com/theislab/dca) | 251 | 11 | 32 | 71 | | [theislab/paga](https://github.com/theislab/paga) | 211 | 10 | 24 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 193 | 7 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 155 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 152 | 9 | 8 | 24 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 147 | 5 | 6 | 13 | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 130 | 7 | 14 | 16 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 12 | 24 | | [theislab/cpa](https://github.com/theislab/cpa) | 90 | 5 | 21 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 79 | 5 | 31 | 11 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 70 | 5 | 14 | 3 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 66 | 7 | 16 | 28 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 57 | 6 | 6 | 8 | +| [theislab/trVAE](https://github.com/theislab/trVAE) | 56 | 6 | 3 | 12 | | [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 55 | 6 | 4 | 13 | -| [theislab/trVAE](https://github.com/theislab/trVAE) | 55 | 6 | 3 | 12 | | [theislab/scTab](https://github.com/theislab/scTab) | 52 | 4 | 1 | 9 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 50 | 9 | 0 | 27 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 39 | 7 | 0 | 6 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 37 | 9 | 3 | 7 | +| [theislab/DRVI](https://github.com/theislab/DRVI) | 33 | 1 | 2 | 3 | | [theislab/scArches-reproducibility](https://github.com/theislab/scArches-reproducibility) | 33 | 4 | 5 | 0 | | [theislab/scvelo_notebooks](https://github.com/theislab/scvelo_notebooks) | 32 | 2 | 4 | 13 | | [theislab/deepflow](https://github.com/theislab/deepflow) | 31 | 5 | 1 | 14 | @@ -77,9 +74,10 @@ GitHub Dashboard | [theislab/prophet](https://github.com/theislab/prophet) | 27 | 6 | 2 | 2 | | [theislab/graph_abstraction](https://github.com/theislab/graph_abstraction) | 26 | 8 | 0 | 10 | | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | -| [theislab/neural_organoid_atlas](https://github.com/theislab/neural_organoid_atlas) | 23 | 6 | 3 | 4 | +| [theislab/neural_organoid_atlas](https://github.com/theislab/neural_organoid_atlas) | 23 | 6 | 4 | 4 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 23 | 4 | 6 | 9 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | +| [theislab/multigrate](https://github.com/theislab/multigrate) | 16 | 3 | 7 | 6 | | [theislab/campa](https://github.com/theislab/campa) | 14 | 4 | 6 | 4 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 1 | 8 | | [theislab/DeepCollisionalCrossSection](https://github.com/theislab/DeepCollisionalCrossSection) | 14 | 5 | 1 | 6 | @@ -125,6 +123,7 @@ GitHub Dashboard | [theislab/theislab.github.io](https://github.com/theislab/theislab.github.io) | 6 | 2 | 9 | 0 | | 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Repos without Github Actions

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Repos without Github Actions

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