diff --git a/README.md b/README.md index ba89313..e9547e4 100644 --- a/README.md +++ b/README.md @@ -2,47 +2,49 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-12-08 12:11:19 UTC +2024-12-09 12:11:21 UTC -| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | -|:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 793 | 19 | 73 | 190 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 103 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | -| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 62 | 103 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 353 | 8 | 22 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/scib](https://github.com/theislab/scib) | 315 | 14 | 41 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) | d35727 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 275 | 14 | 36 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) | e775ed | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 240 | 5 | 42 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12198786686) | 27852f | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 240 | 5 | 42 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 152 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12134366548) | 26f413 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 129 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/12128458868) | 0876db | -| [theislab/moscot](https://github.com/theislab/moscot) | 118 | 3 | 40 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | -| [theislab/ncem](https://github.com/theislab/ncem) | 103 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/spapros](https://github.com/theislab/spapros) | 31 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12217735844) | 1ec08e | -| [theislab/spapros](https://github.com/theislab/spapros) | 31 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | -| [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | -| [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12102480050) | c721ba | -| [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | -| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12128496859) | 4bafbc | -| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 1 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | -| [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | -| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030309) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030299) | e06ea3 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12221590243) | 219ad5 | -| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12102480774) | 5fc4ad | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | +| Repo | Stars | Subscribers | Issues | Forks | Status | Commit | +|:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 793 | 19 | 73 | 190 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | +| [theislab/scvelo](https://github.com/theislab/scvelo) | 419 | 13 | 63 | 103 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 22 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226614361) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226711421) | 82248b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 354 | 8 | 22 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | +| [theislab/scib](https://github.com/theislab/scib) | 315 | 14 | 41 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) | d35727 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 275 | 14 | 36 | 31 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) | e775ed | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 240 | 5 | 42 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12198786686) | 27852f | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 240 | 5 | 42 | 20 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 153 | 5 | 14 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12231555333) | d435dd | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 129 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/12128458868) | 0876db | +| [theislab/moscot](https://github.com/theislab/moscot) | 118 | 3 | 40 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | +| [theislab/moscot](https://github.com/theislab/moscot) | 118 | 3 | 40 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12226630184) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12226554096) | 4080a9 | +| [theislab/ncem](https://github.com/theislab/ncem) | 104 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12227261002) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 32 | 3 | 11 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | +| [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | +| [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | +| [theislab/multimil](https://github.com/theislab/multimil) | 19 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12102480050) | c721ba | +| [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | +| [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12128496859) | 4bafbc | +| [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 1 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 8 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12226666847) | 210765 | +| [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | +| [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | +| [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030309) [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12155030299) | e06ea3 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12235212767) | 1cf048 | +| [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12102480774) | 5fc4ad | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | ## Repos without Github Actions | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1413 | 30 | 21 | 463 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1414 | 30 | 21 | 465 | | [theislab/scarches](https://github.com/theislab/scarches) | 339 | 12 | 53 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 271 | 9 | 28 | 56 | | [theislab/dca](https://github.com/theislab/dca) | 251 | 11 | 32 | 71 | @@ -53,7 +55,7 @@ GitHub Dashboard | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 145 | 5 | 6 | 13 | | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 12 | 24 | | [theislab/cpa](https://github.com/theislab/cpa) | 88 | 5 | 21 | 17 | -| [theislab/destiny](https://github.com/theislab/destiny) | 78 | 5 | 31 | 11 | +| [theislab/destiny](https://github.com/theislab/destiny) | 79 | 5 | 31 | 11 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 67 | 5 | 14 | 2 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 66 | 7 | 16 | 28 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 57 | 6 | 6 | 8 | @@ -111,7 +113,6 @@ GitHub Dashboard | [theislab/2019_Strunz](https://github.com/theislab/2019_Strunz) | 7 | 5 | 1 | 11 | | [theislab/cpa-reproducibility](https://github.com/theislab/cpa-reproducibility) | 7 | 2 | 1 | 1 | | [theislab/ehrapy-tutorials](https://github.com/theislab/ehrapy-tutorials) | 7 | 3 | 0 | 1 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 8 | 3 | | [theislab/mouse_cross-condition_pancreatic_islet_atlas](https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas) | 7 | 2 | 0 | 4 | | [theislab/CFGen](https://github.com/theislab/CFGen) | 6 | 1 | 1 | 4 | | [theislab/disent](https://github.com/theislab/disent) | 6 | 3 | 0 | 0 | diff --git a/index.html b/index.html index 925afad..608b5d4 100644 --- a/index.html +++ b/index.html @@ -49,16 +49,16 @@

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Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 17a8912..f09a184 100644 --- a/repos.csv +++ b/repos.csv @@ -51,7 +51,8 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,6,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,353,8,22,46,FALSE,https://github.com/theislab/cellrank,353,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) +theislab,cellrank,theislab/cellrank,354,8,22,46,FALSE,https://github.com/theislab/cellrank,354,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226614361) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12226711421) +theislab,cellrank,theislab/cellrank,354,8,22,46,FALSE,https://github.com/theislab/cellrank,354,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) * chore: bump ruff pre-commit hook version @@ -142,7 +143,7 @@ theislab,cross_system_integration,theislab/cross_system_integration,11,2,11,2,FA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA theislab,dca,theislab/dca,251,11,32,71,FALSE,https://github.com/theislab/dca,251,NA,NA,NA theislab,deepflow,theislab/deepflow,31,5,1,14,FALSE,https://github.com/theislab/deepflow,31,NA,NA,NA -theislab,destiny,theislab/destiny,78,5,31,11,FALSE,https://github.com/theislab/destiny,78,NA,NA,NA +theislab,destiny,theislab/destiny,79,5,31,11,FALSE,https://github.com/theislab/destiny,79,NA,NA,NA theislab,diffxpy,theislab/diffxpy,193,7,108,23,FALSE,https://github.com/theislab/diffxpy,193,NA,NA,NA theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA @@ -205,7 +206,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,219ad5c540e9aff0e1664bdf63b68b37ad4eb1cb,[status] 2024-12-07 12:13:33 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12221590243) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,1cf048dc6fabe266a939d2df75dc47763d0fc741,[status] 2024-12-08 12:13:35 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12235212767) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA @@ -228,10 +229,15 @@ theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentat theislab,moscot,theislab/moscot,118,3,40,9,FALSE,https://github.com/theislab/moscot,118,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) +theislab,moscot,theislab/moscot,118,3,40,9,FALSE,https://github.com/theislab/moscot,118,4080a94a26839b0dc3691b3fb9dbbf0d0909c29a,"Merge pull request #766 from theislab/refactor/remove-protocol-classes + +Refactor/remove protocol classes",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12226630184) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12226554096) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA -theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,8,3,FALSE,https://github.com/theislab/moscot_notebooks,7,NA,NA,NA +theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,8,3,FALSE,https://github.com/theislab/moscot_notebooks,7,2107658c3ede74ec7c818051bba518143d05db82,"Merge pull request #81 from theislab/add/geodesic_costs + +example on cost geodesic on current example for custom costs",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12226666847) theislab,moslin,theislab/moslin,11,1,0,1,FALSE,https://github.com/theislab/moslin,11,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,4,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) @@ -246,7 +252,7 @@ Multimodal q2r",[![](https://github.com/theislab/multimil/workflows/Check%20Buil theislab,multimil_reproducibility,theislab/multimil_reproducibility,6,3,4,1,FALSE,https://github.com/theislab/multimil_reproducibility,6,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA -theislab,ncem,theislab/ncem,103,6,28,13,FALSE,https://github.com/theislab/ncem,103,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) +theislab,ncem,theislab/ncem,104,6,28,13,FALSE,https://github.com/theislab/ncem,104,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,12,NA,NA,NA theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,21,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,21,NA,NA,NA @@ -323,7 +329,7 @@ Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com> Co-authored-by: Michaela Mueller ",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455) theislab,scib-pipeline,theislab/scib-pipeline,66,7,16,28,FALSE,https://github.com/theislab/scib-pipeline,66,NA,NA,NA theislab,scib-reproducibility,theislab/scib-reproducibility,55,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,55,NA,NA,NA -theislab,scvelo,theislab/scvelo,419,13,62,103,FALSE,https://github.com/theislab/scvelo,419,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) +theislab,scvelo,theislab/scvelo,419,13,63,103,FALSE,https://github.com/theislab/scvelo,419,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281) * Move logging to dedicated module @@ -346,10 +352,7 @@ submodule, local imports do not work anymore. * Remove redundant function definition -* Remove `print_passed_time`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) -theislab,scvelo,theislab/scvelo,419,13,62,103,FALSE,https://github.com/theislab/scvelo,419,b2f31b345641efdccd39fbcb8c0beaa0014b4b88,"Update `pyproject.toml` (#1226) - -Fix package directory.",[![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) +* Remove `print_passed_time`",[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) theislab,scvelo_notebooks,theislab/scvelo_notebooks,32,2,4,13,FALSE,https://github.com/theislab/scvelo_notebooks,32,NA,NA,NA theislab,sfaira,theislab/sfaira,135,8,167,11,FALSE,https://github.com/theislab/sfaira,135,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) theislab,sfaira,theislab/sfaira,135,8,167,11,FALSE,https://github.com/theislab/sfaira,135,5fcf932c44613e6bf4063ef3075ad6062bf5d9a1,round restored counts in some affected datasets,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) @@ -387,12 +390,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,793,19,7 * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,275,14,36,31,FALSE,https://github.com/theislab/single-cell-transformer-papers,275,e775edd612406375ac851e957231f2ecf4c74fb2,add new entry instruction,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12121943778) -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1413,30,21,463,FALSE,https://github.com/theislab/single-cell-tutorial,1413,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1414,30,21,465,FALSE,https://github.com/theislab/single-cell-tutorial,1414,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA -theislab,spapros,theislab/spapros,31,3,11,7,FALSE,https://github.com/theislab/spapros,31,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer +theislab,spapros,theislab/spapros,32,3,11,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12217735844) -theislab,spapros,theislab/spapros,31,3,11,7,FALSE,https://github.com/theislab/spapros,31,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12227261002) +theislab,spapros,theislab/spapros,32,3,11,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA theislab,spapros_reproducibility,theislab/spapros_reproducibility,1,1,0,1,FALSE,https://github.com/theislab/spapros_reproducibility,1,NA,NA,NA @@ -420,6 +423,17 @@ theislab,trvaep,theislab/trvaep,9,3,0,6,FALSE,https://github.com/theislab/trvaep theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,152,5,13,28,FALSE,https://github.com/theislab/zellkonverter,152,26f41334d115a444157ce7fd6bf507363007fd27,"Merge pull request #131 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.7.1 +theislab,zellkonverter,theislab/zellkonverter,153,5,14,28,FALSE,https://github.com/theislab/zellkonverter,153,d435dd163d98048398ab9e1746f401c0b32a1cdb,"Bump JamesIves/github-pages-deploy-action from 4.7.1 to 4.7.2 + +Bumps [JamesIves/github-pages-deploy-action](https://github.com/jamesives/github-pages-deploy-action) from 4.7.1 to 4.7.2. +- [Release notes](https://github.com/jamesives/github-pages-deploy-action/releases) +- [Commits](https://github.com/jamesives/github-pages-deploy-action/compare/v4.7.1...v4.7.2) + +--- +updated-dependencies: +- dependency-name: JamesIves/github-pages-deploy-action + dependency-type: direct:production + update-type: version-update:semver-patch +... -Bump JamesIves/github-pages-deploy-action from 4.6.9 to 4.7.1",[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12134366548) +Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12231555333)
theislab/scvelo 419 136263 103 - 22b6e7
theislab/scvelo4191362103b2f31btheislab/cellrank35482246 +82248b
theislab/cellrank353354 8 22 46
theislab/zellkonverter152153 51314 2826f413d435dd
theislab/sfaira 36d93b
theislab/moscot1183409 +4080a9
theislab/ncem103104 6 28 13 d03a07
theislab/graphcompass 34 2 7c4551
theislab/spapros3132 3 11 7 - 1ec08e
theislab/spapros3132 3 11 7 2f6c1a
theislab/mubind 28 3 3f62f8
theislab/hadge 24 3 1ed105
theislab/multimil 19 5 c721ba
theislab/geome 16 3 402a0a
theislab/scanpydoc 12 6 4bafbc
theislab/cellrank2_reproducibility 8 1 8020e7
theislab/moscot_notebooks7183210765
theislab/spapros-pipeline 7 2 0 0219ad51cf048
theislab/spatialdata-db
theislab/single-cell-tutorial14131414 30 21463465
theislab/scarches
theislab/destiny7879 5 31 11 1
theislab/moscot_notebooks7183
theislab/mouse_cross-condition_pancreatic_islet_atlas 7 2 0 4
theislab/CFGen 6 1 1 4
theislab/disent 6 3 0 0
theislab/intercode 6 3 1 1
theislab/multimil_reproducibility 6 3 4 1
theislab/pancreatic-endocrinogenesis 6 3 0 7
theislab/sfaira_tutorials 6 4 4 2
theislab/theislab.github.io 6 2 9 0
theislab/trVAE_reproducibility 6 3 2 7
theislab/atlas-feature-selection-benchmark 5 2 0 0
theislab/flowVI 5 3 0 0
theislab/InterpretableAutoencoders 5 4 0 0
theislab/kbranches 5 7 0 0
theislab/scanpy-demo-czbiohub 5 5 0 5
theislab/singlecell_proteomics 5 5 6 3
theislab/ssl_in_scg 5 1 0 1
theislab/2022_Tritschler_pancreas_cross_species 4 3 0 1
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theislab/covid-perturbation 4 3 0 0
theislab/feature-attribution-sc 4 2 8 1
theislab/LODE 4 2 9 0
theislab/perturbation-metrics 4 2 1 0
theislab/task-dge-perturbation-prediction-analysis 4 2 0 1
theislab/cellrank_reproducibility_preprint 3 2 0 0
theislab/extended-single-cell-best-practices-container 3 4 2 1
theislab/moscot-framework_reproducibility 3 2 2 0
theislab/moscot_not 3 2 8 1
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theislab/multires-consensus-clustering 3 4 9 0
theislab/nbconvertR 3 3 1 2
theislab/sc_analysis_template 3 3 0 0
theislab/spatial_atlas_ssl 3 2 0 0
theislab/svaeligr 3 3 0 0
theislab/txsim 3 2 40 0
theislab/2020_iPS_Lung_Differentiation 2 5 0 2
theislab/2021_Aliluev_Tritschler_gut_HFD 2 4 0 1
theislab/bartseq-pipeline 2 4 0 3
theislab/campa_ana 2 4 0 0
theislab/covid_macrophages_integration 2 5 0 5
theislab/DRVI_reproducibility 2 3 0 1
theislab/ehrapy-reproducibility 2 1 1 0
theislab/epicardiods_analysis 2 2 1 0
theislab/flexible_priors 2 2 0 0
theislab/gut_lineage 2 3 0 3
theislab/HPA_reproducibility 2 3 0 1
theislab/HRCA-reproducibility 2 4 0 1
theislab/interaction-tools 2 4 0 0
theislab/LineagePulse 2 5 0 0
theislab/LungInjuryRegeneration 2 8 0 0
theislab/masterpraktikum_ssl_segmentation 2 3 0 2
theislab/moscot_benchmarks 2 2 1 0
theislab/scanpy_squidpy_demo_2021 2 4 0 1
theislab/scPoli_legacy 2 5 0 0
theislab/tissue 2 3 0 0
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/archmap_data 1 0 2 0
theislab/astrocytes_reprogramming_analysis 1 5 0 0
theislab/augurpy 1 2 10 0
theislab/autoencoderPS 1 3 0 2
theislab/bartSeq 1 5 1 5
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theislab/ehrapy-site 1 2 0 0
theislab/ifcseq 1 3 0 1
theislab/MS_mv_modelling 1 2 0 1
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theislab/sc_mae 1 2 0 0
theislab/spapros_reproducibility 1 1 0 1
theislab/tardis 1 1 0 2
theislab/tissue_reproducibility 1 3 0 0
theislab/transcription_factor_activity 1 1 5 1
theislab/unbalanced_monge_maps_single_cell 1 1 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2015-grn-inference 0 2 0 0
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
theislab/archmap_admin 0 2 0 0
theislab/archmap_doc 0 3 0 0
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theislab/dali 0 7 0 1
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theislab/MetaMap-web 0 4 2 0
theislab/mubind-benchmark 0 2 19 0
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theislab/pdac_analysis 0 2 0 0
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theislab/sc_ketamine_analysis 0 4 0 0
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