Medcat refresh (#623)

* extracted and modified methods, no big cleanup * updated move to obs, some checks failing * trim down medcat usage * ruff-ed * enhanced docstring * updated doc and test * clean up add to obs * clean up add to obs * tiny test data for medcat * use booleans instead of yes/no
theislab · Dec 14, 2023 · 983a282 · 983a282
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diff --git a/docs/usage/usage.md b/docs/usage/usage.md
@@ -224,10 +224,9 @@ In contrast to a preprocessing function, a tool usually adds an easily interpret
     :nosignatures:
 
     tools.Translator
-    tools.MedCAT
-    tools.mc.run_unsupervised_training
-    tools.mc.annotate_text
-    tools.mc.get_annotation_overview
+    tools.annotate_text
+    tools.get_medcat_annotation_overview
+    tools.add_medcat_annotation_to_obs
 ```
 
 ### Survival Analysis