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Add new metrics#17

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chelseabright96 wants to merge 70 commits intoprocessingtheislab/archmap_data:processingfrom processing_minify_scanvitheislab/archmap_data:processing_minify_scanviCopy head branch name to clipboard

+1,269-371

Commits

Commits on Apr 16, 2024

• retrain classifiers

  chelseabright96

  committed
  ed6cdad

• Merge branch 'processing' into processing_minify_scanvi

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  committed
  30e6156

Commits on Apr 19, 2024

• add ratio and add all query obs to result

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  5394378

• Merge branch 'processing' of github.com:theislab/archmap_data into processing

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  fc3d74d

Commits on Apr 20, 2024

• change webhook

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  baaf856

• fix webhook call

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  942e213

• change to inner join

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  d112a72

• add webhook

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  993eb3d

Commits on Apr 21, 2024

• move call to backend

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  611f71c

• fix error

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  committed
  2da924e

Commits on May 9, 2024

• add presence score and other metrics

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  c00750b

• make max epochs standard

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  9c9f027

• revert renaming

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  authored
  1c94cb0

Commits on May 11, 2024

• uncomment notify backend

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  e89a764

• uncomment notify backend

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  authored
  9484259

Commits on May 12, 2024

• notify backend metrics

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  ed8b986

• Merge branch 'processing_minify_scanvi' of github.com:theislab/archmap_data into processing

  chelseabright96

  committed
  13aa209

Commits on May 14, 2024

• add webhook for metrics

  chelseabright96

  authored
  d2723c5

• add webhook_metrics parameter

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  04bd466

• round metrics

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  committed
  b5bdbc5

• Merge branch 'processing_minify_scanvi' of github.com:theislab/archmap_data into processing

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  committed
  a260341

Commits on May 16, 2024

• fix spoli classifier error

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  8934be3

Commits on May 18, 2024

• add stress score

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  8f91621

Commits on May 21, 2024

• change stress score

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  470b04a

Commits on May 23, 2024

• fix cluster pres score

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  62a0684

Commits on Jun 1, 2024

• add distributed training to scvi models and use speed improvement branch scpoli

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  committed
  0439ab6

Commits on Jun 2, 2024

• change number of devices

  chelseabright96

  authored
  4b7ba0b

• change to absolute path

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  committed
  597012e

• Merge branch 'distributed_training' of github.com:theislab/archmap_data into distributed_training

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  1d10036

• change number of devices

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  5a654cf

Commits on Jun 3, 2024

• add X back for cxg

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  fdc909d

Commits on Jun 4, 2024

• remove threading

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  88f403d

• update get keys function

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  da89ded

• Merge branch 'distributed_training' into processing

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  832ecaa

• remove hardcoding of get_keys

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  fd0a356

• fix unknown key issue

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  db96cec

Commits on Jun 6, 2024

• change lr fetal brain

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  5f5715c

• uncomment

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  4d6d209

Commits on Jun 9, 2024

• increase lr for fetal brain

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  0fe1fcb

Commits on Jun 17, 2024

• speed up metric calculations

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  de6d6d4

• change max_epochs for fetal brain

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  156803c

Commits on Jun 18, 2024

• fix output error

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  ef15501

• move notify backend metrics

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  f6669ae

Commits on Jun 19, 2024

• fix bug percent unknown

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  4451c67

Commits on Jun 20, 2024

• increase fetal brain epochs

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  7800d39

• add cell_type_key_list

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  aeab4e4

• fix bug

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  c0b40f7

• fix bug

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  f57f30d

Commits on Jun 21, 2024

• add cell type key

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  d8a4027

• fix duplicate bug

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  authored
  b50940f

Commits on Jun 22, 2024

• add scanvi pred to ref

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  authored
  82e8e31

• add classifiers for cell type list

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  committed
  3e7b529

Commits on Jun 25, 2024

• add multi label classification and pretrain uncert

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  8f969ff

• print model id

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  79e6027

• fix bug

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  committed
  afdd270

• fix bug

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  committed
  f3ab38d

• uncomment

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  committed
  a223478

Commits on Jun 27, 2024

• change batch key

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  0effefc

• fix batch column

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  3c71ab6

• fix batch key issue

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  d519585

• add hnoca extended name

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  ce1bece

Commits on Jun 28, 2024

• Merge branch 'pretrain' into processing

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  committed
  90106d3

• change cell type key hnoca extended

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  committed
  4f783d9

Commits on Jul 1, 2024

• fix cell type key bug

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  committed
  80206d0

• fix bug

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  committed
  205e6e0

• fix batch error

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  committed
  f42d572

• fix hnoca issue

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  d0b469f

Commits on Jul 4, 2024

• downsample pbmc for download

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  64ef413

Commits on Jul 15, 2024

• add finer cell types hlca

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  f870cf9

• add ann_level_5

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  ee3cea2