[pre-commit.ci] pre-commit autoupdate (#184)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Philipp A. <flying-sheep@web.de>

.pre-commit-config.yaml

@@ -4,7 +4,7 @@ repos:
     hooks:
       - id: trailing-whitespace
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.7
+    rev: v0.6.1
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

demo.ipynb

@@ -12,6 +12,7 @@
    "source": [
     "import anndata2ri\n",
     "\n",
+    "\n",
     "anndata2ri.activate()\n",
     "%load_ext rpy2.ipython"
    ]
@@ -131,4 +132,4 @@
  },
  "nbformat": 4,
  "nbformat_minor": 2
-}
+}

pyproject.toml

@@ -80,6 +80,10 @@ ignore = [
 ]
 allowed-confusables = ['’', '×']
 [tool.ruff.lint.per-file-ignores]
+'**/*.ipynb' = [
+    'T201',  # Allow print in notebooks
+    'F821',  # `%%R -o` means that ruff doesn’t understand which variables exist
+]
 'src/**/*.py' = ['PT']  # No Pytest checks
 'docs/**/*.py' = ['INP001']  # No __init__.py in docs
 'tests/**/*.py' = [