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99,401 changes: 99,401 additions & 0 deletions experiments/measure_metrics/scripts/logs/metrics_phendiff.err

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24 changes: 24 additions & 0 deletions experiments/measure_metrics/scripts/logs/metrics_phendiff.out
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Evaluate on molecule AZ138
FID score 101.28308683329675
D&C score {'precision': 0.8907692307692308, 'recall': 0.0, 'density': 0.8531538461538463, 'coverage': 0.0655980271270037}
Accuracy 0.0
Evaluate on molecule AZ258
FID score 98.56389614258345
D&C score {'precision': 0.9686538461538462, 'recall': 0.0, 'density': 0.8658846153846155, 'coverage': 0.0602247191011236}
Accuracy 0.859423076923077
Evaluate on molecule DMSO
FID score 104.72601983173962
D&C score {'precision': 0.9373076923076923, 'recall': 0.0, 'density': 0.9963076923076923, 'coverage': 0.06019230769230769}
Accuracy 0.796923076923077
Evaluate on molecule cytochalasin B
FID score 88.68632140499301
D&C score {'precision': 0.890576923076923, 'recall': 0.0, 'density': 0.9253846153846155, 'coverage': 0.15853658536585366}
Accuracy 0.0
Evaluate on molecule taxol
FID score 119.52738845307815
D&C score {'precision': 0.9217307692307692, 'recall': 0.0, 'density': 1.0378461538461539, 'coverage': 0.2076700434153401}
Accuracy 0.10923076923076923
Evaluate on molecule vincristine
FID score 113.82268527099319
D&C score {'precision': 0.859423076923077, 'recall': 0.0, 'density': 0.9096153846153847, 'coverage': 0.07905251141552512}
Accuracy 0.0
82,834 changes: 82,834 additions & 0 deletions experiments/measure_metrics/scripts/logs/metrics_phendiff_plot.err

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21 changes: 21 additions & 0 deletions experiments/measure_metrics/scripts/logs/metrics_phendiff_plot.out
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Evaluate on molecule AZ138
FID score 101.2819859836793
D&C score {'precision': 0.8907692307692308, 'recall': 0.0, 'density': 0.8531538461538463, 'coverage': 0.0655980271270037}
Accuracy 0.0
Evaluate on molecule AZ258
FID score 98.563049073131
D&C score {'precision': 0.9686538461538462, 'recall': 0.0, 'density': 0.8658846153846155, 'coverage': 0.0602247191011236}
Accuracy 0.859423076923077
Evaluate on molecule DMSO
Evaluate on molecule cytochalasin B
FID score 88.68666874100126
D&C score {'precision': 0.890576923076923, 'recall': 0.0, 'density': 0.9253846153846155, 'coverage': 0.15853658536585366}
Accuracy 0.0
Evaluate on molecule taxol
FID score 119.52845417959307
D&C score {'precision': 0.9217307692307692, 'recall': 0.0, 'density': 1.0378461538461539, 'coverage': 0.2076700434153401}
Accuracy 0.10923076923076923
Evaluate on molecule vincristine
FID score 113.82265629802765
D&C score {'precision': 0.859423076923077, 'recall': 0.0, 'density': 0.9096153846153847, 'coverage': 0.07905251141552512}
Accuracy 0.0
63 changes: 63 additions & 0 deletions experiments/measure_metrics/scripts/logs/metrics_stytr.err
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0%| | 0/6 [00:00<?, ?it/s]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
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warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
33%|███▎ | 2/6 [05:06<10:10, 152.73s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
50%|█████ | 3/6 [07:36<07:34, 151.53s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
67%|██████▋ | 4/6 [10:06<05:01, 150.93s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
83%|████████▎ | 5/6 [12:38<02:31, 151.18s/it]100%|██████████| 6/6 [12:38<00:00, 126.36s/it]
0%| | 0/6 [00:00<?, ?it/s]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
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warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
33%|███▎ | 2/6 [05:01<10:03, 150.80s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
50%|█████ | 3/6 [07:29<07:27, 149.20s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
67%|██████▋ | 4/6 [09:57<04:58, 149.01s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
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warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
17%|█▋ | 1/6 [02:29<12:27, 149.44s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
33%|███▎ | 2/6 [04:58<09:57, 149.26s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
50%|█████ | 3/6 [07:26<07:25, 148.60s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
67%|██████▋ | 4/6 [09:55<04:57, 148.78s/it]/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:208: UserWarning: The parameter 'pretrained' is deprecated since 0.13 and may be removed in the future, please use 'weights' instead.
warnings.warn(
/home/icb/alessandro.palma/miniconda3/envs/diffusion-experiments/lib/python3.10/site-packages/torchvision/models/_utils.py:223: UserWarning: Arguments other than a weight enum or `None` for 'weights' are deprecated since 0.13 and may be removed in the future. The current behavior is equivalent to passing `weights=None`.
warnings.warn(msg)
83%|████████▎ | 5/6 [12:26<02:29, 149.58s/it]100%|██████████| 6/6 [12:26<00:00, 124.42s/it]
Expand Down
63 changes: 63 additions & 0 deletions experiments/measure_metrics/scripts/logs/metrics_stytr.out
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Evaluate on molecule AZ138
FID score 72.35948702127669
D&C score {'precision': 0.5948076923076923, 'recall': 0.3057692307692308, 'density': 1.0097307692307693, 'coverage': 0.37615384615384617}
Accuracy 0.0
Evaluate on molecule AZ258
FID score 105.04731469366536
D&C score {'precision': 0.4888461538461538, 'recall': 0.33576923076923076, 'density': 0.5422307692307692, 'coverage': 0.34442307692307694}
Accuracy 0.09326923076923077
Evaluate on molecule cytochalasin B
FID score 78.53128104806385
D&C score {'precision': 0.10634615384615384, 'recall': 0.36153846153846153, 'density': 0.11230769230769232, 'coverage': 0.030576923076923078}
Accuracy 0.024615384615384615
Evaluate on molecule taxol
FID score 92.00419475081696
D&C score {'precision': 0.04557692307692308, 'recall': 0.2569230769230769, 'density': 0.04842307692307693, 'coverage': 0.008461538461538461}
Accuracy 0.06153846153846154
Evaluate on molecule vincristine
FID score 71.02179340934231
D&C score {'precision': 0.5848076923076924, 'recall': 0.2173076923076923, 'density': 1.2144615384615385, 'coverage': 0.33134615384615385}
Accuracy 0.05269230769230769
Evaluate on molecule DMSO
Evaluate on molecule AZ138
FID score 73.08715639901257
D&C score {'precision': 0.5855769230769231, 'recall': 0.3151923076923077, 'density': 0.9928076923076923, 'coverage': 0.37384615384615383}
Accuracy 0.0003846153846153846
Evaluate on molecule AZ258
FID score 102.11149928677963
D&C score {'precision': 0.47673076923076924, 'recall': 0.3392307692307692, 'density': 0.5295, 'coverage': 0.34807692307692306}
Accuracy 0.10538461538461538
Evaluate on molecule cytochalasin B
FID score 78.48538491246651
D&C score {'precision': 0.13596153846153847, 'recall': 0.40923076923076923, 'density': 0.1325, 'coverage': 0.028846153846153848}
Accuracy 0.022692307692307692
Evaluate on molecule taxol
FID score 92.56909009113761
D&C score {'precision': 0.030384615384615385, 'recall': 0.2851923076923077, 'density': 0.027153846153846157, 'coverage': 0.008076923076923077}
Accuracy 0.05442307692307692
Evaluate on molecule vincristine
FID score 70.40628971972768
D&C score {'precision': 0.6084615384615385, 'recall': 0.21096153846153845, 'density': 1.1301538461538463, 'coverage': 0.34326923076923077}
Accuracy 0.04923076923076923
Evaluate on molecule DMSO
Evaluate on molecule AZ138
FID score 72.18547455243771
D&C score {'precision': 0.5698076923076923, 'recall': 0.32596153846153847, 'density': 0.9452692307692309, 'coverage': 0.3917307692307692}
Accuracy 0.0
Evaluate on molecule AZ258
FID score 103.07342863473622
D&C score {'precision': 0.495, 'recall': 0.3551923076923077, 'density': 0.5718461538461538, 'coverage': 0.3448076923076923}
Accuracy 0.0975
Evaluate on molecule cytochalasin B
FID score 77.68056740278163
D&C score {'precision': 0.08807692307692308, 'recall': 0.36038461538461536, 'density': 0.08092307692307693, 'coverage': 0.022307692307692306}
Accuracy 0.025576923076923077
Evaluate on molecule taxol
FID score 92.63638962574268
D&C score {'precision': 0.04, 'recall': 0.26, 'density': 0.024461538461538465, 'coverage': 0.0055769230769230765}
Accuracy 0.050576923076923075
Evaluate on molecule vincristine
FID score 71.36662550463387
D&C score {'precision': 0.6126923076923076, 'recall': 0.22538461538461538, 'density': 1.1611923076923076, 'coverage': 0.3521153846153846}
Accuracy 0.056346153846153844
Evaluate on molecule DMSO
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