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index.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Aiden Lab - The Center for Genome Architecture - Baylor College of Medicine</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<meta name="google-site-verification" content="6BslNt4JlshiKPJwQW8LtuX_BLTpolajuxCb06ht4Aw" />
<!-- stylesheets -->
<!--link rel="icon" type="image/png" href="favicon.ico"-->
<!-- CSS -->
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
<link rel="stylesheet" href="//maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<link rel="stylesheet" href="https://code.jquery.com/ui/1.12.1/themes/redmond/jquery-ui.css"/>
<link rel="stylesheet" href="https://igv.org/web/jb/release/cell/igv.css">
<link rel="stylesheet" href="css/juicebox.css">
<!-- Javascript -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/underscore.js/1.8.3/underscore-min.js"></script>
<script src="https://code.jquery.com/jquery-1.12.4.min.js"></script>
<script src="https://code.jquery.com/ui/1.12.1/jquery-ui.min.js"></script>
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
<script src="https://igv.org/web/jb/release/cell/igv.min.js"></script>
<script src="js/juicebox.js"></script>
<!--[if lt IE 9]>
<script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
<!--script src="../js/analytics.js"></script-->
</head>
<body id="home">
<div id="app-container">
<!-- Juicebox app will appear here -->
</div>
<!--https://github.com/igvteam/juicebox.js/wiki/Getting-Started-->
<script type="text/javascript">
$(document).ready(function () {
var browser,
reference;
reference =
{
id: "hg19",
fastaURL: "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/1kg_v37/human_g1k_v37_decoy.fasta",
cytobandURL: "https://s3.amazonaws.com/igv.broadinstitute.org/genomes/seq/b37/b37_cytoband.txt"
};
browser = hic.createBrowser($('#app-container'), { reference: reference });
browser.loadHicFile({
url: "https://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/del-Xa-combined.hic", // url string or File object
name: "HIC001", // display name for the map. Optional, defaults to url
state: "2,2,2,5,5,3,KR"
});
});
</script>
</body>
</html>