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figure7_test.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=edge"/>
<title>Juicebox</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0"/>
<link rel="icon" type="image/png" href="https://aidenlab.org/favicon.ico">
<!-- Shims for legacy browsers -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/es5-shim/4.5.7/es5-shim.min.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/es6-shim/0.35.3/es6-shim.js"></script>
<!-- DataTables CSS -->
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href="https://cdn.datatables.net/v/dt/dt-1.10.15/sc-1.4.2/se-1.2.2/datatables.min.css"/>
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<link rel="stylesheet" type="text/css" href="//maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<!-- JQuery UI CSS -->
<link rel="stylesheet" type="text/css" href="https://code.jquery.com/ui/1.12.1/themes/redmond/jquery-ui.css"/>
<!-- IGV CSS -->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/jb/release/cell/igv.css">
<!-- site CSS -->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/jb/release/cell/site/css/site.css">
<!-- Juicebox CSS-->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/jb/release/cell/juicebox-bootstrap.css">
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href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.12.2/css/bootstrap-select.min.css">
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<!-- Bootstrap JS -->
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
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<script src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.12.2/js/bootstrap-select.min.js"></script>
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<script src="https://cdn.datatables.net/v/dt/dt-1.10.15/sc-1.4.2/se-1.2.2/datatables.min.js"></script>
<!-- IGV JS-->
<script src="https://igv.org/web/jb/release/cell/igv.min.js"></script>
<!-- Site JS-->
<script src="https://igv.org/web/jb/release/cell/site/js/site.js"></script>
<!-- Juicebox JS -->
<script src="https://igv.org/web/jb/release/cell/juicebox.js"></script>
<!-- MS polyfill (pointer -> touch -->
<script src="https://igv.org/web/jb/release/current/touchpolyfill.min.js"></script>
</head>
<body style="margin:30px">
<h1 style="text-align: center; font:Helvetica Neue;font-size:36px;line-height: 40px; color: #333333
">Figure 7</h1>
<div class="row">
<div class="col-md-8">
<div>
<p style="font-size:30px" class="panelID">C</p>
</div>
<br>
</div>
</div>
<div class="row">
<div class="col-md-5">
<div class="row">
<div class="col-md-8 col-md-offset-4">
<div>
<img class="img-responsive"
src="https://theaidenlab.github.io/figures/css/img/figure2_static_components/Fig2A_untreated_header.png"
alt="Untreated" width="300">
</div>
<br>
</div>
</div>
</div>
<div class="col-md-5">
<div class="row">
<div class="col-md-8 col-md-offset-4">
<div>
<img class="img-responsive"
src="https://theaidenlab.github.io/figures/css/img/figure2_static_components/Fig2A_treated_header.png"
alt="6hr Auxin Treated" width="300">
</div>
<br>
</div>
</div>
</div>
</div>
<div class="row">
<div class="col-md-5">
<div class="row">
<div class="col-md-10 col-md-offset-2">
<div id="app-container-1">
</div>
<br>
</div>
</div>
</div>
<div class="col-md-5">
<div class="row">
<div class="col-md-10 col-md-offset-2">
<div id="app-container-2">
</div>
<br>
</div>
</div>
</div>
</div>
<br>
<div>
<p class="legend">(C) An example of a strongly down-regulated gene near a superenhancer. In untreated cells, a
series of cohesin-associated loops form between the IER5L promoter and nearby superenhancers. Upon auxin
treatment, these loops are lost and IER5L expression is 2.6-fold down-regulated. (Note that, unlike this
example, many of the genes that are strongly down-regulated after treatment do not exhibit visible
promoter-enhancer looping in untreated cells.) </p>
</div>
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display: flex;
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text-align: left;
font: Helvetica Neue;
font-size: 36;
px color: #333333;
}
.col-md-2 {
display: inline-flex;
flex-direction: column;
justify-content: center;
}
</style>
<script type="text/javascript">
$(document).ready(function () {
var browser1, browser2;
var windowSize = 445;
igv.xhr.loadJson("config/hicFileConfigs.txt", {})
.then(function (config) {
hic.loadDataset({
url: config["degron/untreated/unsynchronized/combined.hic"],
nvi: "30439217680%2C36479"
})
.then(function (dataset) {
browser1 = hic.createBrowser($('#app-container-1'), {
miniMode: true,
width: windowSize,
height: windowSize,
dataset: dataset,
initialImage: "img/fig7-1.png",
href: "?state=9%2C9%2C7%2C13180%2C13180%2C4.46%2CKR&colorScale=160&name=Rao%20et%20al.%20%7C%20Biorxiv%202017%20Combined%20Untreated&tracks=https%3A%2F%2Fs3.amazonaws.com%2Fhicfiles%2Fhiseq%2Fdegron%2Fchipseq%5Fdata%2Funtreated%2FH3K27Ac%5FFE.bw%7CUntreated%20H3K27Ac%7C0-3%7Crgb(255%2C0%2C0)"
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if (browser2) hic.syncBrowsers([browser1, browser2]);
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console.log(error);
})
hic.loadDataset({
url: config["degron/treated_6hr/unsynchronized/combined.hic"],
nvi: "33255540403%2C36479"
})
.then(function (dataset) {
browser2 = hic.createBrowser($('#app-container-2'), {
miniMode: true,
width: windowSize,
height: windowSize,
dataset: dataset,
initialImage: "img/fig7-2.png",
href: "?state=9%2C9%2C7%2C13180%2C13180%2C4.46%2CKR&colorScale=160&name=Rao%20et%20al.%20%7C%20Biorxiv%202017%20Combined%20Treated%20(6%20hr)&tracks=https%3A%2F%2Fs3.amazonaws.com%2Fhicfiles%2Fhiseq%2Fdegron%2Fchipseq%5Fdata%2Ftreated%2FH3K27Ac%5FFE.bw%7C6hr%20Treated%20H3K27Ac%7C0-3%7Crgb(255%2C0%2C0)"
});
if (browser1) hic.syncBrowsers([browser1, browser2]);
})
.catch(function (error) {
console.log(error);
});
});
});
</script>
</body>
</html>