MetaWorks v1.9.3

Updated snakemake_ESV to correctly map read counts to results.csv when the ITS marker is analyzed.

MetaWorks v1.9.2

Fixed the tabulation of stats for primer-trimmed reads. Previous version was underestimating number of reads by half. This did NOT affect the final results.csv .

MetaWorks v1.9.1

Fixed pseudogene-removal method 1 so that only records with good ORFs are printed in the final report. Previously, all taxonomic assignments were shown, but the good records (pseudogene-free) also contained an ORF sequence.

MetaWorks v1.9.0

Update to support the 12S vertebrate classifier.

MetaWorks v1.8.1

A directory of Perl scripts was missing from v1.8.0 and has been added back to this version.

MetaWorks v1.8.0

Added a new dataflow to generate GLOBAL OTUs for samples that were sequenced and processed individually with snakemake_ESV .

MetaWorks v1.7.1

Fixed so that sample names are retained, not just amplicon names.

MetaWorks v1.7.0

The standard pipeline was updated to remove primers in one step instead of two and to make the code easier to read.

MetaWorks v1.6.2

Added some libraries that ORFfinder might be missing on some systems using an older version of GLIBC. Instructions on how to download ORFfinder, put it in the conda environment bin, create a symbolic link to libc.so.6, and edit the LD_LIBRARY_PATH environment variable are provided in the README.

MetaWorks v1.6.1

Updated version numbers in config and snakefiles.