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When updating NetCDFF_jll to v4.6.0, I get a segmentation when running Flexpart:
julia> Flexpart.run()
Welcome to FLEXPART Version 10.4 (2019-11-12)
FLEXPART is free software released under the GNU General Public License.
WARNING: path not ending in//home/tcarion/.julia/artifacts/8ba836dac6b721ae2792516e29d94233f3d20ecf/tests/input/deterministic
fix: padded with //home/tcarion/.julia/artifacts/8ba836dac6b721ae2792516e29d94233f3d20ecf/tests/input/deterministic/length(i) increased 1----------------
INFORMATION: SUBGRIDSCALE TERRAIN EFFECT IS
NOT PARAMETERIZED DURING THIS SIMULATION.
----------------
ECMWF metdata detected
Vertical levels in ECMWF data:138138
Mother domain:
Longitude range:4.00000 to 6.00000 Grid distance:0.20000
Latitude range :49.00000 to 52.20000 Grid distance:0.20000
Releasepoints :1
SPECIES:24 AIRTRACER (GAS)
Wet removal for gases is turned: OFF
Dry deposition for gases is turned: OFF
Below-cloud scavenging: OFF
In-cloud scavenging: OFF
Particles allocated (maxpart) :2000000
Particles released (numpartmax):10000
Total mass released:1.0000000E+00
Allocating fields forglobal output (x,y):1016
Allocating fields for nested output (x,y):00
Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
Backtrace for this error:#0 0x7efe3a65d3ff in ???#1 0x7efe3b45ded4 in nf_def_var_quantize_
at /workspace/srcdir/netcdf-fortran-4.6.0/fortran/nf_nc4.F90:1639#2 0x7efe3b4a5ff2 in __netcdf_MOD_nf90_def_var_manydims
at /workspace/srcdir/netcdf-fortran-4.6.0/fortran/netcdf4_variables.F90:276#3 0x47729a in ???#4 0x4964c8 in ???#5 0x403690 in ???#6 0x7efe3a649554 in ???#7 0x4036c0 in ???
at ../sysdeps/x86_64/elf/start.S:113
The seg fault disappears for NetCDFF_jll@4.5.3, but then it won't compile on julia@v1.8:
julia>VERSIONv"1.8.0"
julia>using Flexpart
[ Info: Precompiling Flexpart [fb362612-c2d8-4302-a9fd-a07f2890630f]
ERROR: LoadError: InitError: could not load library "/home/tcarion/.julia/artifacts/0a7f440ba143b238cc3dd0def2956d34d76755f3/lib/libnetcdf.so"
libmbedtls.so.13: cannot open shared object file: No such file or directory
So at the moment, the only way of running Flexpart is to force to use NetCDFF_jjl@4.5.3 and run it with julia v1.7
The text was updated successfully, but these errors were encountered:
When updating
NetCDFF_jll
to v4.6.0, I get a segmentation when running Flexpart:The seg fault disappears for NetCDFF_jll@4.5.3, but then it won't compile on julia@v1.8:
So at the moment, the only way of running Flexpart is to force to use NetCDFF_jjl@4.5.3 and run it with julia v1.7
The text was updated successfully, but these errors were encountered: