Brown bag bump to 1.3.3 #1484

roomrys · 2023-09-11T21:27:41Z

Description

This is a brown-bag release of 1.3.3 after testing the wheel in colab https://colab.research.google.com/drive/1L0cW_uG-Qv3qy30jTXBB8fsuiXzeQTAq?usp=sharing

Types of changes

Does this address any currently open issues?

Outside contributors checklist

Review the guidelines for contributing to this repository
Read and sign the CLA and add yourself to the authors list
Make sure you are making a pull request against the develop branch (not main). Also you should start your branch off develop
Add tests that prove your fix is effective or that your feature works
Add necessary documentation (if appropriate)

Thank you for contributing to SLEAP!

❤️

Summary by CodeRabbit

New Feature: Upgraded SLEAP to version 1.3.3 across all documentation and notebooks, ensuring users have access to the latest features and bug fixes.
Bug Fix: Updated TensorFlow version constraints in pypi_requirements.txt to ensure compatibility with the latest versions of other dependencies.
Documentation: Revised installation instructions in docs/installation.md to reflect the new SLEAP version.
Chore: Adjusted the pip installation commands in various Jupyter notebooks to use the updated SLEAP version.

coderabbitai · 2023-09-11T21:53:07Z

Walkthrough

This pull request primarily focuses on updating the version of the sleap package across various files from older versions to 1.3.3 or >=1.3.3. It also includes changes in TensorFlow dependencies for different platforms in the requirements file.

Changes

File(s)	Summary
`.github/ISSUE_TEMPLATE/bug_report.md`, `docs/conf.py`, `sleap/version.py`	Updated the software version number from `1.3.2` to `1.3.3`.
`docs/installation.md`, `pypi_requirements.txt`	Updated the `sleap` package version and TensorFlow dependencies for different platforms.
`docs/notebooks/*.ipynb`	Changed the pip installation command for the `sleap` package to ensure at least version `1.3.3` is installed.

🐇💻

"In the land of code, where the shadows lie,

A rabbit hops, under the cloudless sky.

With each leap forward, a version anew,

Bugs squashed, features polished, for me and you.

So raise your carrots, high and free,

Here's to sleap, version 1.3.3!" 🥕🎉

Tips

Chat with CodeRabbit Bot (`@coderabbitai`)

Mention @coderabbitai in any review comment for bot assistance.
Note: Review comments are made on code diffs or files, not on the PR overview.

Pause Incremental Reviews

Insert @coderabbitai: ignore in the PR description to halt the bot's ongoing reviews. Remove the line to resume.

coderabbitai

Review Status

Actionable comments generated: 0

Commits

Files that changed from the base of the PR and between e4fca4f and 42ab441 commits.

Files selected for processing (12)

.github/ISSUE_TEMPLATE/bug_report.md (1 hunks)
docs/conf.py (1 hunks)
docs/installation.md (1 hunks)
docs/notebooks/Data_structures.ipynb (1 hunks)
docs/notebooks/Interactive_and_realtime_inference.ipynb (1 hunks)
docs/notebooks/Interactive_and_resumable_training.ipynb (1 hunks)
docs/notebooks/Model_evaluation.ipynb (1 hunks)
docs/notebooks/Post_inference_tracking.ipynb (1 hunks)
docs/notebooks/Training_and_inference_on_an_example_dataset.ipynb (1 hunks)
docs/notebooks/Training_and_inference_using_Google_Drive.ipynb (1 hunks)
pypi_requirements.txt (1 hunks)
sleap/version.py (1 hunks)

Files skipped from review due to trivial changes (9)

.github/ISSUE_TEMPLATE/bug_report.md
docs/conf.py
docs/installation.md
docs/notebooks/Data_structures.ipynb
docs/notebooks/Interactive_and_realtime_inference.ipynb
docs/notebooks/Model_evaluation.ipynb
docs/notebooks/Post_inference_tracking.ipynb
pypi_requirements.txt
sleap/version.py

Additional comments (Suppressed): 3

docs/notebooks/Training_and_inference_on_an_example_dataset.ipynb (1)

62-66: Ensure that the new version of sleap (1.3.3) is compatible with the rest of the codebase and doesn't introduce any breaking changes.
docs/notebooks/Interactive_and_resumable_training.ipynb (1)
65-65: The version of sleap package has been updated from 1.3.1 to 1.3.3. Ensure that this change is compatible with the rest of the codebase and doesn't introduce any breaking changes.
- "!pip install -qqq sleap==1.3.1\n",
+ "!pip install -qqq sleap[pypi]>=1.3.3\n",
docs/notebooks/Training_and_inference_using_Google_Drive.ipynb (1)

59-62: The SLEAP version has been updated from 1.3.1 to 1.3.3. Ensure that the new version doesn't introduce any breaking changes or incompatibilities with the current notebook.

codecov · 2023-09-11T22:17:22Z

Codecov Report

Merging #1484 (8a0a6af) into develop (734283a) will decrease coverage by 0.02%.
Report is 11 commits behind head on develop.
The diff coverage is 58.33%.

❗ Current head 8a0a6af differs from pull request most recent head 30c93b3. Consider uploading reports for the commit 30c93b3 to get more accurate results

@@             Coverage Diff             @@
##           develop    #1484      +/-   ##
===========================================
- Coverage    73.12%   73.11%   -0.02%     
===========================================
  Files          134      134              
  Lines        23956    23963       +7     
===========================================
+ Hits         17519    17521       +2     
- Misses        6437     6442       +5

Files Changed	Coverage Δ
sleap/gui/overlays/base.py	`57.64% <54.54%> (-1.33%)`	⬇️
sleap/version.py	`100.00% <100.00%> (ø)`

... and 1 file with indirect coverage changes

📣 We’re building smart automated test selection to slash your CI/CD build times. Learn more

coderabbitai

Review Status

Actionable comments generated: 0

Commits

Files that changed from the base of the PR and between 42ab441 and ae26cdb commits.

Files selected for processing (1)

docs/installation.md (1 hunks)

Files skipped from review due to trivial changes (1)

docs/installation.md

coderabbitai

Review Status

Actionable comments generated: 0

Commits

Files that changed from the base of the PR and between ae26cdb and 8a0a6af commits.

Files selected for processing (1)

docs/installation.md (1 hunks)

Files skipped from review due to trivial changes (1)

docs/installation.md

coderabbitai

Review Status

Actionable comments generated: 0

Commits

Files that changed from the base of the PR and between 8a0a6af and 30c93b3 commits.

Files selected for processing (7)

docs/notebooks/Data_structures.ipynb (1 hunks)
docs/notebooks/Interactive_and_realtime_inference.ipynb (1 hunks)
docs/notebooks/Interactive_and_resumable_training.ipynb (1 hunks)
docs/notebooks/Model_evaluation.ipynb (1 hunks)
docs/notebooks/Post_inference_tracking.ipynb (1 hunks)
docs/notebooks/Training_and_inference_on_an_example_dataset.ipynb (1 hunks)
docs/notebooks/Training_and_inference_using_Google_Drive.ipynb (1 hunks)

Files skipped from review due to trivial changes (1)

docs/notebooks/Training_and_inference_using_Google_Drive.ipynb

Additional comments (Suppressed): 6

docs/notebooks/Training_and_inference_on_an_example_dataset.ipynb (1)

64-65: Ensure that the new version of sleap (1.3.3 or higher) does not introduce any breaking changes or incompatibilities with the current codebase.

docs/notebooks/Interactive_and_realtime_inference.ipynb (1)

63-63: The version of sleap has been updated from 1.3.1 to 1.3.3. Ensure that this new version is compatible with the rest of the codebase and does not introduce any breaking changes.

docs/notebooks/Interactive_and_resumable_training.ipynb (1)

65-65: The version of sleap package has been updated from 1.3.1 to >=1.3.3. Ensure that the new version doesn't introduce any breaking changes or incompatibilities with the current codebase.

docs/notebooks/Data_structures.ipynb (1)

59-59: The version constraint for the sleap package has been updated from a fixed version to >=1.3.3. This means any version equal to or greater than 1.3.3 is acceptable. Ensure that this change is intentional and that there are no compatibility issues with versions higher than 1.3.3.

docs/notebooks/Post_inference_tracking.ipynb (1)

64-64: The version constraint for the sleap package has been changed from a fixed version to >=1.3.3. This means any version equal to or greater than 1.3.3 is acceptable. Ensure that this change does not introduce compatibility issues with other parts of the codebase that depend on specific features or behaviors of the sleap package.
docs/notebooks/Model_evaluation.ipynb (1)
43-43: The version constraint for the sleap package has been updated from a fixed version "1.3.1" to a more flexible one ">=1.3.3". This allows for any version equal to or greater than 1.3.3 to be installed, which can include future updates and bug fixes. However, ensure that this does not introduce any breaking changes with newer versions of the package.
- "!pip install -qqq sleap==1.3.1\n",
+ "!pip install -qqq \"sleap[pypi]>=1.3.3\"\n",

* Do not try to remove item if already deleted (#1498) * Set `LD_LIBRARY_PATH` on `mamba activate` (#1496) * Add version restrictions to tensorflow for pypi (#1485) * Remove `imageio` pin (#1501) * Reset LD_LIBRARY_PATH on deactivate (#1502) * Brown bag bump to 1.3.3 (#1484)

roomrys and others added 5 commits September 11, 2023 13:39

Add version restrictions to tensorflow for pypi

a4d2da8

Bump to 1.3.3

d32b566

Change to prerelease version, advise 1.3.1 pypi installation

2c8c889

Change version back req release 1.3.3, advise 1.3.3 pip install

0648f83

Advise 1.3.3 pip install

42ab441

roomrys changed the title ~~Brown bag bump to 1.3.3a0~~ Brown bag bump to 1.3.3 Sep 11, 2023

roomrys marked this pull request as ready for review September 11, 2023 21:53

coderabbitai bot reviewed Sep 11, 2023

View reviewed changes

roomrys changed the base branch from develop to liezl/hotfix-1.3.2 September 11, 2023 22:05

roomrys requested a review from talmo September 11, 2023 22:33

roomrys mentioned this pull request Sep 12, 2023

Failure to Start GUI #1476

Closed

4 tasks

roomrys and others added 8 commits September 12, 2023 16:11

Get GUI working on Linux

3ec76be

Add comments

bd8e335

Merge branch 'develop' into liezl/hotfix-1.3.2

fc35d46

Get GUI working on Windows

1f69080

Get inference working on windows

9ad9e6b

Restrict urllib3 range (non-blocking error in installation)

8db46b4

Get training/inference working on linux minimal environment

034e58b

Merge branch 'liezl/hotfix-1.3.2' into liezl/bump-1.3.3

ae26cdb

coderabbitai bot reviewed Sep 14, 2023

View reviewed changes

Base automatically changed from liezl/hotfix-1.3.2 to develop September 14, 2023 21:24

Merge branch 'develop' into liezl/bump-1.3.3

8a0a6af

coderabbitai bot reviewed Sep 15, 2023

View reviewed changes

roomrys added 2 commits September 15, 2023 15:46

Put quotes around sleap install

33fca44

Put quotes around sleap install

30c93b3

coderabbitai bot reviewed Sep 15, 2023

View reviewed changes

roomrys merged commit a2092f0 into develop Sep 15, 2023

roomrys deleted the liezl/bump-1.3.3 branch September 15, 2023 22:55

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Brown bag bump to 1.3.3 #1484

Brown bag bump to 1.3.3 #1484

roomrys commented Sep 11, 2023 •

edited by coderabbitai bot

Loading

coderabbitai bot commented Sep 11, 2023 •

edited

Loading

Chat with CodeRabbit Bot (`@coderabbitai`)

Pause Incremental Reviews

coderabbitai bot left a comment

codecov bot commented Sep 11, 2023 •

edited

Loading

coderabbitai bot left a comment

coderabbitai bot left a comment

coderabbitai bot left a comment

Brown bag bump to 1.3.3 #1484

Brown bag bump to 1.3.3 #1484

Conversation

roomrys commented Sep 11, 2023 • edited by coderabbitai bot Loading

Description

Types of changes

Does this address any currently open issues?

Outside contributors checklist

Thank you for contributing to SLEAP!

Summary by CodeRabbit

coderabbitai bot commented Sep 11, 2023 • edited Loading

Walkthrough

Changes

Chat with CodeRabbit Bot (@coderabbitai)

Pause Incremental Reviews

coderabbitai bot left a comment

Choose a reason for hiding this comment

codecov bot commented Sep 11, 2023 • edited Loading

Codecov Report

coderabbitai bot left a comment

Choose a reason for hiding this comment

coderabbitai bot left a comment

Choose a reason for hiding this comment

coderabbitai bot left a comment

Choose a reason for hiding this comment

roomrys commented Sep 11, 2023 •

edited by coderabbitai bot

Loading

coderabbitai bot commented Sep 11, 2023 •

edited

Loading

Chat with CodeRabbit Bot (`@coderabbitai`)

codecov bot commented Sep 11, 2023 •

edited

Loading