From 7ee7382618cde324ca3bb2799466a27d4bd1f411 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 17 Jun 2022 00:09:27 +0000 Subject: [PATCH] Bump notebook from 6.4.8 to 6.4.12 Bumps [notebook](http://jupyter.org) from 6.4.8 to 6.4.12. --- updated-dependencies: - dependency-name: notebook dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 773 ++++++++++++++++++++++++++-------------------------- 1 file changed, 379 insertions(+), 394 deletions(-) diff --git a/poetry.lock b/poetry.lock index c3aa212..df243bb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,58 +1,57 @@ [[package]] -category = "main" -description = "Disable App Nap on macOS >= 10.9" -marker = "sys_platform == \"darwin\" or platform_system == \"Darwin\" or python_version >= \"3.3\" and sys_platform == \"darwin\"" name = "appnope" +version = "0.1.2" +description = "Disable App Nap on macOS >= 10.9" +category = "main" optional = false python-versions = "*" -version = "0.1.2" [[package]] -category = "main" -description = "The secure Argon2 password hashing algorithm." name = "argon2-cffi" +version = "20.1.0" +description = "The secure Argon2 password hashing algorithm." +category = "main" optional = false python-versions = "*" -version = "20.1.0" [package.dependencies] cffi = ">=1.0.0" six = "*" [package.extras] -dev = ["coverage (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "wheel", "pre-commit"] docs = ["sphinx"] -tests = ["coverage (>=5.0.2)", "hypothesis", "pytest"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] [[package]] -category = "main" -description = "Classes Without Boilerplate" name = "attrs" +version = "21.4.0" +description = "Classes Without Boilerplate" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "21.4.0" [package.extras] -dev = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] [[package]] -category = "main" -description = "Specifications for callback functions passed in to an API" name = "backcall" +version = "0.2.0" +description = "Specifications for callback functions passed in to an API" +category = "main" optional = false python-versions = "*" -version = "0.2.0" [[package]] -category = "main" -description = "An easy safelist-based HTML-sanitizing tool." name = "bleach" +version = "4.1.0" +description = "An easy safelist-based HTML-sanitizing tool." +category = "main" optional = false python-versions = ">=3.6" -version = "4.1.0" [package.dependencies] packaging = "*" @@ -60,92 +59,90 @@ six = ">=1.9.0" webencodings = "*" [[package]] -category = "main" -description = "Python package for providing Mozilla's CA Bundle." name = "certifi" +version = "2021.10.8" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" optional = false python-versions = "*" -version = "2021.10.8" [[package]] -category = "main" -description = "Foreign Function Interface for Python calling C code." name = "cffi" +version = "1.15.0" +description = "Foreign Function Interface for Python calling C code." +category = "main" optional = false python-versions = "*" -version = "1.15.0" [package.dependencies] pycparser = "*" [[package]] -category = "main" -description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -marker = "python_version >= \"3\"" name = "charset-normalizer" +version = "2.0.10" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." +category = "main" optional = false python-versions = ">=3.5.0" -version = "2.0.10" [package.extras] unicode_backport = ["unicodedata2"] [[package]] -category = "main" -description = "Cross-platform colored terminal text." -marker = "python_version >= \"3.3\" and sys_platform == \"win32\" or sys_platform == \"win32\"" name = "colorama" +version = "0.4.4" +description = "Cross-platform colored terminal text." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "0.4.4" [[package]] -category = "main" -description = "Composable style cycles" name = "cycler" +version = "0.11.0" +description = "Composable style cycles" +category = "main" optional = false python-versions = ">=3.6" -version = "0.11.0" [[package]] -category = "main" -description = "An implementation of the Debug Adapter Protocol for Python" name = "debugpy" +version = "1.5.1" +description = "An implementation of the Debug Adapter Protocol for Python" +category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" -version = "1.5.1" [[package]] -category = "main" -description = "Decorators for Humans" name = "decorator" +version = "5.1.1" +description = "Decorators for Humans" +category = "main" optional = false python-versions = ">=3.5" -version = "5.1.1" [[package]] -category = "main" -description = "XML bomb protection for Python stdlib modules" name = "defusedxml" +version = "0.7.1" +description = "XML bomb protection for Python stdlib modules" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "0.7.1" [[package]] -category = "main" -description = "Discover and load entry points from installed packages." name = "entrypoints" +version = "0.3" +description = "Discover and load entry points from installed packages." +category = "main" optional = false python-versions = ">=2.7" -version = "0.3" [[package]] -category = "main" -description = "Tools to manipulate font files" name = "fonttools" +version = "4.29.0" +description = "Tools to manipulate font files" +category = "main" optional = false python-versions = ">=3.7" -version = "4.29.0" [package.extras] all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] @@ -161,21 +158,20 @@ unicode = ["unicodedata2 (>=14.0.0)"] woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] [[package]] -category = "main" -description = "Internationalized Domain Names in Applications (IDNA)" -marker = "python_version >= \"3\"" name = "idna" +version = "3.3" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "main" optional = false python-versions = ">=3.5" -version = "3.3" [[package]] -category = "main" -description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." name = "imageio" +version = "2.14.1" +description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." +category = "main" optional = false python-versions = ">=3.5" -version = "2.14.1" [package.dependencies] numpy = "*" @@ -195,51 +191,44 @@ test = ["invoke", "pytest", "pytest-cov"] tifffile = ["tifffile"] [[package]] -category = "main" -description = "Read metadata from Python packages" -marker = "python_version < \"3.8\"" name = "importlib-metadata" +version = "4.10.1" +description = "Read metadata from Python packages" +category = "main" optional = false python-versions = ">=3.7" -version = "4.10.1" [package.dependencies] +typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""} zipp = ">=0.5" -[package.dependencies.typing-extensions] -python = "<3.8" -version = ">=3.6.4" - [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] perf = ["ipython"] testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] [[package]] -category = "main" -description = "Read resources from Python packages" -marker = "python_version < \"3.9\"" name = "importlib-resources" +version = "5.4.0" +description = "Read resources from Python packages" +category = "main" optional = false python-versions = ">=3.6" -version = "5.4.0" [package.dependencies] -[package.dependencies.zipp] -python = "<3.10" -version = ">=3.1.0" +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] [[package]] -category = "main" -description = "A set of widgets to help facilitate reuse of large datasets across widgets" name = "ipydatawidgets" +version = "4.2.0" +description = "A set of widgets to help facilitate reuse of large datasets across widgets" +category = "main" optional = false python-versions = "*" -version = "4.2.0" [package.dependencies] ipywidgets = ">=7.0.0" @@ -252,15 +241,15 @@ docs = ["sphinx", "recommonmark", "sphinx-rtd-theme"] test = ["pytest (>=4)", "pytest-cov", "nbval (>=0.9.2)"] [[package]] -category = "main" -description = "IPython Kernel for Jupyter" name = "ipykernel" +version = "6.7.0" +description = "IPython Kernel for Jupyter" +category = "main" optional = false python-versions = ">=3.7" -version = "6.7.0" [package.dependencies] -appnope = "*" +appnope = {version = "*", markers = "platform_system == \"Darwin\""} debugpy = ">=1.0.0,<2.0" ipython = ">=7.23.1" jupyter-client = "<8.0" @@ -273,25 +262,24 @@ traitlets = ">=5.1.0,<6.0" test = ["pytest (!=5.3.4)", "pytest-cov", "flaky", "ipyparallel"] [[package]] -category = "main" -description = "IPython: Productive Interactive Computing" name = "ipython" +version = "7.31.1" +description = "IPython: Productive Interactive Computing" +category = "main" optional = false python-versions = ">=3.7" -version = "7.31.1" [package.dependencies] -appnope = "*" +appnope = {version = "*", markers = "sys_platform == \"darwin\""} backcall = "*" -colorama = "*" +colorama = {version = "*", markers = "sys_platform == \"win32\""} decorator = "*" jedi = ">=0.16" matplotlib-inline = "*" -pexpect = ">4.3" +pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" pygments = "*" -setuptools = ">=18.5" traitlets = ">=4.2" [package.extras] @@ -306,87 +294,81 @@ qtconsole = ["qtconsole"] test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"] [[package]] -category = "main" -description = "Vestigial utilities from IPython" name = "ipython-genutils" +version = "0.2.0" +description = "Vestigial utilities from IPython" +category = "main" optional = false python-versions = "*" -version = "0.2.0" [[package]] -category = "main" -description = "IPython widget for rendering 3d volumes" name = "ipyvolume" +version = "0.5.2" +description = "IPython widget for rendering 3d volumes" +category = "main" optional = false python-versions = "*" -version = "0.5.2" [package.dependencies] -Pillow = "*" ipywebrtc = "*" ipywidgets = ">=7.5" numpy = "*" +Pillow = "*" pythreejs = ">=1.0.0" requests = "*" traitlets = "*" traittypes = "*" [[package]] -category = "main" -description = "WebRTC for Jupyter notebook/lab" name = "ipywebrtc" +version = "0.6.0" +description = "WebRTC for Jupyter notebook/lab" +category = "main" optional = false python-versions = "*" -version = "0.6.0" [[package]] -category = "main" -description = "IPython HTML widgets for Jupyter" name = "ipywidgets" +version = "7.6.5" +description = "IPython HTML widgets for Jupyter" +category = "main" optional = false python-versions = "*" -version = "7.6.5" [package.dependencies] ipykernel = ">=4.5.1" +ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""} ipython-genutils = ">=0.2.0,<0.3.0" +jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} nbformat = ">=4.2.0" traitlets = ">=4.3.1" widgetsnbextension = ">=3.5.0,<3.6.0" -[package.dependencies.ipython] -python = ">=3.3" -version = ">=4.0.0" - -[package.dependencies.jupyterlab-widgets] -python = ">=3.6" -version = ">=1.0.0" - [package.extras] test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] [[package]] -category = "main" -description = "An autocompletion tool for Python that can be used for text editors." name = "jedi" +version = "0.18.1" +description = "An autocompletion tool for Python that can be used for text editors." +category = "main" optional = false python-versions = ">=3.6" -version = "0.18.1" [package.dependencies] parso = ">=0.8.0,<0.9.0" [package.extras] -qa = ["flake8 (3.8.3)", "mypy (0.782)"] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] -category = "main" -description = "A very fast and expressive template engine." name = "jinja2" +version = "3.0.3" +description = "A very fast and expressive template engine." +category = "main" optional = false python-versions = ">=3.6" -version = "3.0.3" [package.dependencies] MarkupSafe = ">=2.0" @@ -395,48 +377,39 @@ MarkupSafe = ">=2.0" i18n = ["Babel (>=2.7)"] [[package]] -category = "main" -description = "Lightweight pipelining with Python functions" name = "joblib" +version = "1.1.0" +description = "Lightweight pipelining with Python functions" +category = "main" optional = false python-versions = ">=3.6" -version = "1.1.0" [[package]] -category = "main" -description = "An implementation of JSON Schema validation for Python" name = "jsonschema" +version = "4.4.0" +description = "An implementation of JSON Schema validation for Python" +category = "main" optional = false python-versions = ">=3.7" -version = "4.4.0" [package.dependencies] attrs = ">=17.4.0" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" - -[package.dependencies.importlib-metadata] -python = "<3.8" -version = "*" - -[package.dependencies.importlib-resources] -python = "<3.9" -version = ">=1.4.0" - -[package.dependencies.typing-extensions] -python = "<3.8" -version = "*" +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] [[package]] -category = "main" -description = "Jupyter metapackage. Install all the Jupyter components in one go." name = "jupyter" +version = "1.0.0" +description = "Jupyter metapackage. Install all the Jupyter components in one go." +category = "main" optional = false python-versions = "*" -version = "1.0.0" [package.dependencies] ipykernel = "*" @@ -447,12 +420,12 @@ notebook = "*" qtconsole = "*" [[package]] -category = "main" -description = "Jupyter protocol implementation and client libraries" name = "jupyter-client" +version = "7.1.2" +description = "Jupyter protocol implementation and client libraries" +category = "main" optional = false python-versions = ">=3.6.1" -version = "7.1.2" [package.dependencies] entrypoints = "*" @@ -468,12 +441,12 @@ doc = ["myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-git test = ["codecov", "coverage", "ipykernel", "ipython", "mock", "mypy", "pre-commit", "pytest", "pytest-asyncio", "pytest-cov", "pytest-timeout", "jedi (<0.18)"] [[package]] -category = "main" -description = "Jupyter terminal console" name = "jupyter-console" +version = "6.4.0" +description = "Jupyter terminal console" +category = "main" optional = false python-versions = ">=3.6" -version = "6.4.0" [package.dependencies] ipykernel = "*" @@ -486,68 +459,67 @@ pygments = "*" test = ["pexpect"] [[package]] -category = "main" -description = "Jupyter core package. A base package on which Jupyter projects rely." name = "jupyter-core" +version = "4.9.1" +description = "Jupyter core package. A base package on which Jupyter projects rely." +category = "main" optional = false python-versions = ">=3.6" -version = "4.9.1" [package.dependencies] -pywin32 = ">=1.0" +pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} traitlets = "*" [[package]] -category = "main" -description = "Pygments theme using JupyterLab CSS variables" name = "jupyterlab-pygments" +version = "0.1.2" +description = "Pygments theme using JupyterLab CSS variables" +category = "main" optional = false python-versions = "*" -version = "0.1.2" [package.dependencies] pygments = ">=2.4.1,<3" [[package]] -category = "main" -description = "A JupyterLab extension." -marker = "python_version >= \"3.6\"" name = "jupyterlab-widgets" +version = "1.0.2" +description = "A JupyterLab extension." +category = "main" optional = false python-versions = ">=3.6" -version = "1.0.2" [[package]] -category = "main" -description = "A fast implementation of the Cassowary constraint solver" name = "kiwisolver" +version = "1.3.2" +description = "A fast implementation of the Cassowary constraint solver" +category = "main" optional = false python-versions = ">=3.7" -version = "1.3.2" [[package]] -category = "main" -description = "lightweight wrapper around basic LLVM functionality" name = "llvmlite" +version = "0.34.0" +description = "lightweight wrapper around basic LLVM functionality" +category = "main" optional = false python-versions = ">=3.6" -version = "0.35.0rc3" [[package]] -category = "main" -description = "Safely add untrusted strings to HTML/XML markup." name = "markupsafe" +version = "2.0.1" +description = "Safely add untrusted strings to HTML/XML markup." +category = "main" optional = false python-versions = ">=3.6" -version = "2.0.1" [[package]] -category = "main" -description = "Python plotting package" name = "matplotlib" +version = "3.5.1" +description = "Python plotting package" +category = "main" optional = false python-versions = ">=3.7" -version = "3.5.1" [package.dependencies] cycler = ">=0.10" @@ -561,31 +533,31 @@ python-dateutil = ">=2.7" setuptools_scm = ">=4" [[package]] -category = "main" -description = "Inline Matplotlib backend for Jupyter" name = "matplotlib-inline" +version = "0.1.3" +description = "Inline Matplotlib backend for Jupyter" +category = "main" optional = false python-versions = ">=3.5" -version = "0.1.3" [package.dependencies] traitlets = "*" [[package]] -category = "main" -description = "The fastest markdown parser in pure Python" name = "mistune" -optional = false -python-versions = "*" version = "0.8.4" +description = "The fastest markdown parser in pure Python" +category = "main" +optional = false +python-versions = "*" [[package]] -category = "main" -description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." name = "nbclient" +version = "0.5.10" +description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." +category = "main" optional = false python-versions = ">=3.7.0" -version = "0.5.10" [package.dependencies] jupyter-client = ">=6.1.5" @@ -598,12 +570,12 @@ sphinx = ["Sphinx (>=1.7)", "sphinx-book-theme", "mock", "moto", "myst-parser"] test = ["ipython", "ipykernel", "ipywidgets (<8.0.0)", "pytest (>=4.1)", "pytest-cov (>=2.6.1)", "check-manifest", "flake8", "mypy", "xmltodict", "black", "pip (>=18.1)", "wheel (>=0.31.0)", "setuptools (>=38.6.0)", "twine (>=1.11.0)"] [[package]] -category = "main" -description = "Converting Jupyter Notebooks" name = "nbconvert" +version = "6.4.0" +description = "Converting Jupyter Notebooks" +category = "main" optional = false python-versions = ">=3.7" -version = "6.4.0" [package.dependencies] bleach = "*" @@ -621,19 +593,19 @@ testpath = "*" traitlets = ">=5.0" [package.extras] -all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] +all = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)", "tornado (>=4.0)", "sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] docs = ["sphinx (>=1.5.1)", "sphinx-rtd-theme", "nbsphinx (>=0.2.12)", "ipython"] serve = ["tornado (>=4.0)"] -test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (0.2.6)"] -webpdf = ["pyppeteer (0.2.6)"] +test = ["pytest", "pytest-cov", "pytest-dependency", "ipykernel", "ipywidgets (>=7)", "pyppeteer (==0.2.6)"] +webpdf = ["pyppeteer (==0.2.6)"] [[package]] -category = "main" -description = "The Jupyter Notebook format" name = "nbformat" +version = "5.1.3" +description = "The Jupyter Notebook format" +category = "main" optional = false python-versions = ">=3.5" -version = "5.1.3" [package.dependencies] ipython-genutils = "*" @@ -646,49 +618,49 @@ fast = ["fastjsonschema"] test = ["check-manifest", "fastjsonschema", "testpath", "pytest", "pytest-cov"] [[package]] -category = "main" -description = "Patch asyncio to allow nested event loops" name = "nest-asyncio" +version = "1.5.4" +description = "Patch asyncio to allow nested event loops" +category = "main" optional = false python-versions = ">=3.5" -version = "1.5.4" [[package]] -category = "main" -description = "Python package for creating and manipulating graphs and networks" name = "networkx" +version = "2.6.3" +description = "Python package for creating and manipulating graphs and networks" +category = "main" optional = false python-versions = ">=3.7" -version = "2.6.3" [package.extras] -default = ["numpy (>=1.19)", "scipy (>=1.5,<1.6.1 || >1.6.1)", "matplotlib (>=3.3)", "pandas (>=1.1)"] -developer = ["black (21.5b1)", "pre-commit (>=2.12)"] +default = ["numpy (>=1.19)", "scipy (>=1.5,!=1.6.1)", "matplotlib (>=3.3)", "pandas (>=1.1)"] +developer = ["black (==21.5b1)", "pre-commit (>=2.12)"] doc = ["sphinx (>=4.0,<5.0)", "pydata-sphinx-theme (>=0.6,<1.0)", "sphinx-gallery (>=0.9,<1.0)", "numpydoc (>=1.1)", "pillow (>=8.2)", "nb2plots (>=0.6)", "texext (>=0.6.6)"] extra = ["lxml (>=4.5)", "pygraphviz (>=1.7)", "pydot (>=1.4.1)"] test = ["pytest (>=6.2)", "pytest-cov (>=2.12)", "codecov (>=2.1)"] [[package]] -category = "main" -description = "A web-based notebook environment for interactive computing" name = "notebook" +version = "6.4.12" +description = "A web-based notebook environment for interactive computing" +category = "main" optional = false -python-versions = ">=3.6" -version = "6.4.8" +python-versions = ">=3.7" [package.dependencies] -Send2Trash = ">=1.8.0" argon2-cffi = "*" ipykernel = "*" ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" -nbconvert = "*" +nbconvert = ">=5" nbformat = "*" nest-asyncio = ">=1.5" prometheus-client = "*" pyzmq = ">=17" +Send2Trash = ">=1.8.0" terminado = ">=0.8.3" tornado = ">=6.1" traitlets = ">=4.2.1" @@ -696,47 +668,46 @@ traitlets = ">=4.2.1" [package.extras] docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] json-logging = ["json-logging"] -test = ["pytest", "coverage", "requests", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] +test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pytest-cov", "requests-unixsocket"] [[package]] -category = "main" -description = "compiling Python code using LLVM" name = "numba" +version = "0.51.2" +description = "compiling Python code using LLVM" +category = "main" optional = false python-versions = ">=3.6" -version = "0.51.2" [package.dependencies] llvmlite = ">=0.34.0.dev0,<0.35" numpy = ">=1.15" -setuptools = "*" [[package]] -category = "main" -description = "NumPy is the fundamental package for array computing with Python." name = "numpy" +version = "1.19.5" +description = "NumPy is the fundamental package for array computing with Python." +category = "main" optional = false python-versions = ">=3.6" -version = "1.19.5" [[package]] -category = "main" -description = "Core utilities for Python packages" name = "packaging" +version = "21.3" +description = "Core utilities for Python packages" +category = "main" optional = false python-versions = ">=3.6" -version = "21.3" [package.dependencies] pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] -category = "main" -description = "Powerful data structures for data analysis, time series, and statistics" name = "pandas" +version = "1.1.2" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" optional = false python-versions = ">=3.6.1" -version = "1.1.2" [package.dependencies] numpy = ">=1.15.4" @@ -747,146 +718,143 @@ pytz = ">=2017.2" test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"] [[package]] -category = "main" -description = "Utilities for writing pandoc filters in python" name = "pandocfilters" +version = "1.5.0" +description = "Utilities for writing pandoc filters in python" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.5.0" [[package]] -category = "main" -description = "A Python Parser" name = "parso" +version = "0.8.3" +description = "A Python Parser" +category = "main" optional = false python-versions = ">=3.6" -version = "0.8.3" [package.extras] -qa = ["flake8 (3.8.3)", "mypy (0.782)"] +qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["docopt", "pytest (<6.0.0)"] [[package]] -category = "main" -description = "Pexpect allows easy control of interactive console applications." -marker = "python_version >= \"3.3\" and sys_platform != \"win32\" or sys_platform != \"win32\"" name = "pexpect" +version = "4.8.0" +description = "Pexpect allows easy control of interactive console applications." +category = "main" optional = false python-versions = "*" -version = "4.8.0" [package.dependencies] ptyprocess = ">=0.5" [[package]] -category = "main" -description = "Tiny 'shelve'-like database with concurrency support" name = "pickleshare" +version = "0.7.5" +description = "Tiny 'shelve'-like database with concurrency support" +category = "main" optional = false python-versions = "*" -version = "0.7.5" [[package]] -category = "main" -description = "Python Imaging Library (Fork)" name = "pillow" +version = "9.0.0" +description = "Python Imaging Library (Fork)" +category = "main" optional = false python-versions = ">=3.7" -version = "9.0.0" [[package]] -category = "main" -description = "Python client for the Prometheus monitoring system." name = "prometheus-client" +version = "0.13.0" +description = "Python client for the Prometheus monitoring system." +category = "main" optional = false python-versions = ">=3.6" -version = "0.13.0" [package.extras] twisted = ["twisted"] [[package]] -category = "main" -description = "Library for building powerful interactive command lines in Python" name = "prompt-toolkit" +version = "3.0.24" +description = "Library for building powerful interactive command lines in Python" +category = "main" optional = false python-versions = ">=3.6.2" -version = "3.0.24" [package.dependencies] wcwidth = "*" [[package]] -category = "main" -description = "Run a subprocess in a pseudo terminal" -marker = "python_version >= \"3.3\" and sys_platform != \"win32\" or sys_platform != \"win32\" or os_name != \"nt\" or python_version >= \"3.3\" and sys_platform != \"win32\" and (python_version >= \"3.3\" and sys_platform != \"win32\" or sys_platform != \"win32\")" name = "ptyprocess" +version = "0.7.0" +description = "Run a subprocess in a pseudo terminal" +category = "main" optional = false python-versions = "*" -version = "0.7.0" [[package]] -category = "main" -description = "library with cross-python path, ini-parsing, io, code, log facilities" -marker = "implementation_name == \"pypy\"" name = "py" +version = "1.11.0" +description = "library with cross-python path, ini-parsing, io, code, log facilities" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "1.11.0" [[package]] -category = "main" -description = "C parser in Python" name = "pycparser" +version = "2.21" +description = "C parser in Python" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.21" [[package]] -category = "main" -description = "Pygments is a syntax highlighting package written in Python." name = "pygments" +version = "2.11.2" +description = "Pygments is a syntax highlighting package written in Python." +category = "main" optional = false python-versions = ">=3.5" -version = "2.11.2" [[package]] -category = "main" -description = "Python parsing module" name = "pyparsing" +version = "3.0.7" +description = "Python parsing module" +category = "main" optional = false python-versions = ">=3.6" -version = "3.0.7" [package.extras] diagrams = ["jinja2", "railroad-diagrams"] [[package]] -category = "main" -description = "Persistent/Functional/Immutable data structures" name = "pyrsistent" +version = "0.18.1" +description = "Persistent/Functional/Immutable data structures" +category = "main" optional = false python-versions = ">=3.7" -version = "0.18.1" [[package]] -category = "main" -description = "Extensions to the standard Python datetime module" name = "python-dateutil" +version = "2.8.2" +description = "Extensions to the standard Python datetime module" +category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" -version = "2.8.2" [package.dependencies] six = ">=1.5" [[package]] -category = "main" -description = "Interactive 3D graphics for the Jupyter Notebook and JupyterLab, using Three.js and Jupyter Widgets." name = "pythreejs" +version = "2.3.0" +description = "Interactive 3D graphics for the Jupyter Notebook and JupyterLab, using Three.js and Jupyter Widgets." +category = "main" optional = false python-versions = "*" -version = "2.3.0" [package.dependencies] ipydatawidgets = ">=1.1.1" @@ -899,61 +867,59 @@ examples = ["scipy", "matplotlib", "scikit-image", "ipywebrtc"] test = ["nbval", "pytest-check-links", "numpy (>=1.14)"] [[package]] -category = "main" -description = "World timezone definitions, modern and historical" name = "pytz" +version = "2021.3" +description = "World timezone definitions, modern and historical" +category = "main" optional = false python-versions = "*" -version = "2021.3" [[package]] -category = "main" -description = "PyWavelets, wavelet transform module" name = "pywavelets" +version = "1.2.0" +description = "PyWavelets, wavelet transform module" +category = "main" optional = false python-versions = ">=3.7" -version = "1.2.0" [package.dependencies] numpy = ">=1.17.3" [[package]] -category = "main" -description = "Python for Window Extensions" -marker = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\"" name = "pywin32" +version = "303" +description = "Python for Window Extensions" +category = "main" optional = false python-versions = "*" -version = "303" [[package]] -category = "main" -description = "Pseudo terminal support for Windows from Python." -marker = "os_name == \"nt\"" name = "pywinpty" +version = "2.0.1" +description = "Pseudo terminal support for Windows from Python." +category = "main" optional = false python-versions = ">=3.6" -version = "2.0.1" [[package]] -category = "main" -description = "Python bindings for 0MQ" name = "pyzmq" +version = "22.3.0" +description = "Python bindings for 0MQ" +category = "main" optional = false python-versions = ">=3.6" -version = "22.3.0" [package.dependencies] -cffi = "*" -py = "*" +cffi = {version = "*", markers = "implementation_name == \"pypy\""} +py = {version = "*", markers = "implementation_name == \"pypy\""} [[package]] -category = "main" -description = "Jupyter Qt console" name = "qtconsole" +version = "5.2.2" +description = "Jupyter Qt console" +category = "main" optional = false python-versions = ">= 3.6" -version = "5.2.2" [package.dependencies] ipykernel = ">=4.1" @@ -970,12 +936,12 @@ doc = ["Sphinx (>=1.3)"] test = ["flaky", "pytest", "pytest-qt"] [[package]] -category = "main" -description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." name = "qtpy" +version = "2.0.0" +description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." +category = "main" optional = false python-versions = ">=3.6" -version = "2.0.0" [package.dependencies] packaging = "*" @@ -984,60 +950,54 @@ packaging = "*" test = ["pytest (>=6.0.0,<7.0)", "pytest-cov (>=2.11.0)"] [[package]] -category = "main" -description = "Python HTTP for Humans." name = "requests" +version = "2.27.1" +description = "Python HTTP for Humans." +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" -version = "2.27.1" [package.dependencies] certifi = ">=2017.4.17" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} urllib3 = ">=1.21.1,<1.27" -[package.dependencies.charset-normalizer] -python = ">=3" -version = ">=2.0.0,<2.1.0" - -[package.dependencies.idna] -python = ">=3" -version = ">=2.5,<4" - [package.extras] -socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] +socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] -category = "main" -description = "Image processing in Python" name = "scikit-image" +version = "0.19.1" +description = "Image processing in Python" +category = "main" optional = false python-versions = ">=3.7" -version = "0.19.1" [package.dependencies] -PyWavelets = ">=1.1.1" imageio = ">=2.4.1" networkx = ">=2.2" numpy = ">=1.17.0" packaging = ">=20.0" pillow = ">=6.1.0,<7.1.0 || >7.1.0,<7.1.1 || >7.1.1,<8.3.0 || >8.3.0" +PyWavelets = ">=1.1.1" scipy = ">=1.4.1" tifffile = ">=2019.7.26" [package.extras] data = ["pooch (>=1.3.0)"] -docs = ["sphinx (>=1.8)", "sphinx-gallery (>=0.10.1)", "numpydoc (>=1.0)", "sphinx-copybutton", "pytest-runner", "scikit-learn", "matplotlib (>=3.3)", "dask (>=0.15.0,<2.17.0 || >2.17.0)", "cloudpickle (>=0.2.1)", "pandas (>=0.23.0)", "seaborn (>=0.7.1)", "pooch (>=1.3.0)", "tifffile (>=2020.5.30)", "myst-parser", "ipywidgets", "plotly (>=4.14.0)", "kaleido"] -optional = ["simpleitk", "astropy (>=3.1.2)", "cloudpickle (>=0.2.1)", "dask (>=1.0.0,<2.17.0 || >2.17.0)", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pyamg", "qtpy"] +docs = ["sphinx (>=1.8)", "sphinx-gallery (>=0.10.1)", "numpydoc (>=1.0)", "sphinx-copybutton", "pytest-runner", "scikit-learn", "matplotlib (>=3.3)", "dask[array] (>=0.15.0,!=2.17.0)", "cloudpickle (>=0.2.1)", "pandas (>=0.23.0)", "seaborn (>=0.7.1)", "pooch (>=1.3.0)", "tifffile (>=2020.5.30)", "myst-parser", "ipywidgets", "plotly (>=4.14.0)", "kaleido"] +optional = ["simpleitk", "astropy (>=3.1.2)", "cloudpickle (>=0.2.1)", "dask[array] (>=1.0.0,!=2.17.0)", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pyamg", "qtpy"] test = ["asv", "codecov", "flake8", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pytest (>=5.2.0)", "pytest-cov (>=2.7.0)", "pytest-localserver", "pytest-faulthandler"] [[package]] -category = "main" -description = "A set of python modules for machine learning and data mining" name = "scikit-learn" +version = "1.0.2" +description = "A set of python modules for machine learning and data mining" +category = "main" optional = false python-versions = ">=3.7" -version = "1.0.2" [package.dependencies] joblib = ">=0.11" @@ -1052,31 +1012,37 @@ examples = ["matplotlib (>=2.2.3)", "scikit-image (>=0.14.5)", "pandas (>=0.25.0 tests = ["matplotlib (>=2.2.3)", "scikit-image (>=0.14.5)", "pandas (>=0.25.0)", "pytest (>=5.0.1)", "pytest-cov (>=2.9.0)", "flake8 (>=3.8.2)", "black (>=21.6b0)", "mypy (>=0.770)", "pyamg (>=4.0.0)"] [[package]] -category = "main" -description = "SciPy: Scientific Library for Python" name = "scipy" +version = "1.6.0" +description = "SciPy: Scientific Library for Python" +category = "main" optional = false python-versions = ">=3.7" -version = "1.6.0" [package.dependencies] numpy = ">=1.16.5" [[package]] -category = "main" -description = "Seaborn: statistical data visualization" name = "seaborn" +version = "0.8.1" +description = "Seaborn: statistical data visualization" +category = "main" optional = false python-versions = "*" -version = "0.8.1" + +[package.dependencies] +matplotlib = "*" +numpy = "*" +pandas = "*" +scipy = "*" [[package]] -category = "main" -description = "Send file to trash natively under Mac OS X, Windows and Linux." name = "send2trash" +version = "1.8.0" +description = "Send file to trash natively under Mac OS X, Windows and Linux." +category = "main" optional = false python-versions = "*" -version = "1.8.0" [package.extras] nativelib = ["pyobjc-framework-cocoa", "pywin32"] @@ -1084,16 +1050,15 @@ objc = ["pyobjc-framework-cocoa"] win32 = ["pywin32"] [[package]] -category = "main" -description = "the blessed package to manage your versions by scm tags" name = "setuptools-scm" +version = "6.4.2" +description = "the blessed package to manage your versions by scm tags" +category = "main" optional = false python-versions = ">=3.6" -version = "6.4.2" [package.dependencies] packaging = ">=20.0" -setuptools = "*" tomli = ">=1.0.0" [package.extras] @@ -1101,63 +1066,63 @@ test = ["pytest (>=6.2)", "virtualenv (>20)"] toml = ["setuptools (>=42)"] [[package]] -category = "main" -description = "Python 2 and 3 compatibility utilities" name = "six" +version = "1.16.0" +description = "Python 2 and 3 compatibility utilities" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" -version = "1.16.0" [[package]] -category = "main" -description = "Analysis of object skeletons" name = "skan" +version = "0.9" +description = "Analysis of object skeletons" +category = "main" optional = false python-versions = "*" -version = "0.9" [[package]] -category = "main" -description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." name = "terminado" +version = "0.12.1" +description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." +category = "main" optional = false python-versions = ">=3.6" -version = "0.12.1" [package.dependencies] -ptyprocess = "*" -pywinpty = ">=1.1.0" +ptyprocess = {version = "*", markers = "os_name != \"nt\""} +pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} tornado = ">=4" [package.extras] test = ["pytest"] [[package]] -category = "main" -description = "Test utilities for code working with files and commands" name = "testpath" +version = "0.5.0" +description = "Test utilities for code working with files and commands" +category = "main" optional = false python-versions = ">= 3.5" -version = "0.5.0" [package.extras] test = ["pytest", "pathlib2"] [[package]] -category = "main" -description = "threadpoolctl" name = "threadpoolctl" +version = "3.0.0" +description = "threadpoolctl" +category = "main" optional = false python-versions = ">=3.6" -version = "3.0.0" [[package]] -category = "main" -description = "Read and write TIFF files" name = "tifffile" +version = "2021.11.2" +description = "Read and write TIFF files" +category = "main" optional = false python-versions = ">=3.7" -version = "2021.11.2" [package.dependencies] numpy = ">=1.15.1" @@ -1166,39 +1131,39 @@ numpy = ">=1.15.1" all = ["imagecodecs (>=2021.7.30)", "matplotlib (>=3.2)", "lxml"] [[package]] -category = "main" -description = "A lil' TOML parser" name = "tomli" +version = "2.0.0" +description = "A lil' TOML parser" +category = "main" optional = false python-versions = ">=3.7" -version = "2.0.0" [[package]] -category = "main" -description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." name = "tornado" +version = "6.1" +description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." +category = "main" optional = false python-versions = ">= 3.5" -version = "6.1" [[package]] -category = "main" -description = "Traitlets Python configuration system" name = "traitlets" +version = "5.1.1" +description = "Traitlets Python configuration system" +category = "main" optional = false python-versions = ">=3.7" -version = "5.1.1" [package.extras] test = ["pytest"] [[package]] -category = "main" -description = "Scipy trait types" name = "traittypes" +version = "0.2.1" +description = "Scipy trait types" +category = "main" optional = false python-versions = "*" -version = "0.2.1" [package.dependencies] traitlets = ">=4.2.2" @@ -1207,71 +1172,69 @@ traitlets = ">=4.2.2" test = ["numpy", "pandas", "xarray", "pytest"] [[package]] -category = "main" -description = "Backported and Experimental Type Hints for Python 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