more improvements #1154
Annotations
6 errors and 8 warnings
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Setup R from r-lib
No such keg: /opt/homebrew/Cellar/r
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Run CMD check
Package suggested but not available: ‘Seurat’
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Run CMD check
Package suggested but not available: ‘Seurat’
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Run CMD check
R CMD check found ERRORs
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Run CMD check
Process completed with exit code 1.
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Install dependencies pass 1
package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Setup R from r-lib
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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Setup R from r-lib
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Install macOS system dependencies
harfbuzz 8.4.0 is already installed and up-to-date.
To reinstall 8.4.0, run:
brew reinstall harfbuzz
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Install macOS system dependencies
macOS's Gatekeeper has been disabled for this Cask
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Install dependencies pass 1
dependency ‘Matrix’ is not available
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "macOS-biocversion-RELEASE_3_16-r-4.2-results", "Windows-biocversion-RELEASE_3_16-r-4.2-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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