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Version 0.7.0
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@welchr welchr released this 06 Feb 01:51
· 152 commits to master since this release
v0.7.0
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welchr Ryan Welch
GPG key ID: EF4FB2CB39B4DF68
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Learn about vigilant mode.
e97aec7
This commit was signed with the committer’s verified signature.
welchr Ryan Welch
GPG key ID: EF4FB2CB39B4DF68
Verified
Learn about vigilant mode.

Backward incompatible changes

  • summaryStatDataset was changed to summaryStatisticDataset for consistency

New features

  • Support for rvtest/raremetal files lacking a proper header
  • Support for alternative variant format (such as CHR:POS:REF:ALT)
  • Improved exception handling and error reporting code
    • More C++ errors are supported and properly reported
    • Better error messaging for when phenotype file is not able to be read
    • Better reporting of exactly where in a file an invalid value was encountered
  • Reworked Dockerfile to better avoid cache misses

Bug fixes

  • Properly handle edge case in rvtest where NaN allele frequency is reported for singletons observed in related samples
  • Fixed two separate bugs causing file descriptors to be allocated but never released
  • Return the empty set instead of throwing a server error if no variants exist within mask region in genotype or summary statistic file
  • Only use SENTRY_DSN if it is actually populated with a value
  • Redis version was previously unpinned in docker compose yaml, now pinned to 5.x
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