A Python frontend to (Open Biomedical) Ontologies.

Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data

To automate data collection from ICGC database.

Hydra is a framework for elegantly configuring complex applications

Documentation for Crossref's REST API. For questions or suggestions, see https://community.crossref.org/

MyGene.info: A BioThings API for gene annotations

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

Google Drive Public File Downloader when Curl/Wget Fails

Parse GFF3 into Pandas dataframes

Python biomart API

retrieve protein sequence identifiers and metadata from http://uniprot.org

Python library to build pretty command line user prompts ✨Easy to use multi-select lists, confirmations, free text prompts ...

build GUIs from type annotations

Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.

Human-readable digests.

the AI-native open-source embedding database

pipreqs - Generate pip requirements.txt file based on imports of any project. Looking for maintainers to move this project forward.

Python 3.8+ toolbox for submitting jobs to Slurm

A python wrapper for libmagic

Python library to access Gene Expression Omnibus Database (GEO)