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@sriram-lab

Systems Biology at University of Michigan

Machine learning and constraint-based modeling software from the Chandrasekaran Lab

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  1. MetOncoFit Public

    Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

    HTML 1 6

  2. astrix Public

    Using gene expression data to identify regulatory interactions between transcription factors and target genes.

    MATLAB

  3. egem Public

    epigenome scale metabolic modeling for cancer metabolism

    MATLAB 4 2

  4. dfa Public

    Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.

    MATLAB 1 1

  5. MAGENTA Public

    Metabolism And GENomics-based Tailoring of Antibiotic regimens: predicts the impact of pathogen environment on antibiotic potency based on chemogenomic data.

    C++ 1 1

Repositories

Showing 10 of 20 repositories
  • M2D2 Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Mar 31, 2025
  • emt-cobra Public

    Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

    HTML 3 GPL-3.0 1 0 0 Updated Dec 7, 2024
  • TACTIC Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 2, 2024
  • SCOOTI Public

    Single Cell Optimization Objective and Tradeoff Inference

    Python 0 AGPL-3.0 1 1 0 Updated Nov 24, 2024
  • CARAMeL Public

    Condition-specific Antibiotic Regimen Assessment using Mechanistic Learning

    MATLAB 1 GPL-3.0 0 0 0 Updated Jul 24, 2024
  • INDIGOpy Public

    Implementation of INDIGO (INferring Drug Interactions using chemoGenomics and Orthology) as a Python package.

    Python 1 GPL-3.0 0 0 0 Updated Jun 4, 2024
  • quiescence-depth-modulation Public

    Leveraging Metabolic Modeling and Machine Learning to Uncover Modulators of Quiescence Depth

    MATLAB 0 GPL-3.0 0 0 0 Updated Jan 19, 2024
  • metoncofit-website Public

    A dashboard for the MetOncoFit tumor models.

    Python 0 MIT 1 0 3 Updated Dec 8, 2022
  • met-ptm-drug-cancer Public

    Machine learning to learn metabolite-histone-drug interactions in cancer.

    Jupyter Notebook 0 MIT 1 0 0 Updated Nov 19, 2022
  • MetOncoFit Public

    Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.

    HTML 1 GPL-3.0 6 10 11 Updated Sep 30, 2022
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