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@som-shahlab

Dr. Nigam Shah's research group at Stanford Medicine

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  1. medalign medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    95 9

  2. ehrshot-benchmark ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 171 20

  3. femr femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 141 24

  4. trove trove Public

    Weakly supervised medical named entity classification

    Python 73 21

  5. meds_reader meds_reader Public

    C++ 19

Repositories

Showing 10 of 54 repositories
  • medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    som-shahlab/medalign’s past year of commit activity
    95 MIT 9 1 0 Updated May 17, 2025
  • ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    som-shahlab/ehrshot-benchmark’s past year of commit activity
    Jupyter Notebook 171 Apache-2.0 20 5 0 Updated May 14, 2025
  • meds_reader Public
    som-shahlab/meds_reader’s past year of commit activity
    C++ 19 Apache-2.0 0 1 0 Updated May 8, 2025
  • tte-pretraining Public

    Code for the paper "Time-to-event pretraining for 3D medical imaging"

    som-shahlab/tte-pretraining’s past year of commit activity
    Python 2 0 0 0 Updated May 8, 2025
  • aplusml Public

    APLUS ML = A Python Library for Usefulness Simulations of Machine Learning models

    som-shahlab/aplusml’s past year of commit activity
    Jupyter Notebook 21 Apache-2.0 5 4 0 Updated May 7, 2025
  • inspect-website Public
    som-shahlab/inspect-website’s past year of commit activity
    SCSS 0 MIT 0 0 0 Updated May 2, 2025
  • med-nota Public
    som-shahlab/med-nota’s past year of commit activity
    Python 2 1 0 0 Updated Apr 16, 2025
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    som-shahlab/femr’s past year of commit activity
    Python 141 Apache-2.0 24 5 3 Updated Apr 16, 2025
  • INSPECT_public Public

    INSPECT dataset/benchmark paper, accepted by NeurIPS 2023

    som-shahlab/INSPECT_public’s past year of commit activity
    Python 29 Apache-2.0 2 6 0 Updated Apr 16, 2025
  • med-s1 Public Forked from simplescaling/s1

    s1: Simple test-time scaling

    som-shahlab/med-s1’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 747 0 0 Updated Apr 11, 2025
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