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@som-shahlab

som-shahlab

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  1. medalign medalign Public

    MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

    90 9

  2. ehrshot-benchmark ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    Jupyter Notebook 147 11

  3. femr femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    Python 122 16

  4. trove trove Public

    Weakly supervised medical named entity classification

    Python 70 21

  5. meds_reader meds_reader Public

    C++ 15

Repositories

Showing 10 of 51 repositories
  • med-s1 Public Forked from simplescaling/s1

    s1: Simple test-time scaling

    som-shahlab/med-s1’s past year of commit activity
    Python 0 Apache-2.0 442 0 0 Updated Feb 8, 2025
  • long_context_clues Public

    Taking off-the-shelf HuggingFace models and training them on EHR data

    som-shahlab/long_context_clues’s past year of commit activity
    Jupyter Notebook 10 Apache-2.0 2 0 0 Updated Feb 5, 2025
  • femr Public

    FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

    som-shahlab/femr’s past year of commit activity
    Python 122 Apache-2.0 16 4 1 Updated Feb 3, 2025
  • inspect-website Public
    som-shahlab/inspect-website’s past year of commit activity
    SCSS 0 MIT 0 0 0 Updated Feb 3, 2025
  • meds_reader Public
    som-shahlab/meds_reader’s past year of commit activity
    C++ 15 Apache-2.0 0 0 0 Updated Dec 18, 2024
  • shahlab-blog Public Forked from oboy-1/shahlab-website

    Shah Lab Jekyll website

    som-shahlab/shahlab-blog’s past year of commit activity
    HTML 1 MIT 1 0 0 Updated Dec 11, 2024
  • factehr Public
    som-shahlab/factehr’s past year of commit activity
    Python 15 0 0 0 Updated Dec 9, 2024
  • ehrshot-benchmark Public

    A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)

    som-shahlab/ehrshot-benchmark’s past year of commit activity
    Jupyter Notebook 147 Apache-2.0 11 3 0 Updated Nov 21, 2024
  • meds_reader_paper_code Public
    som-shahlab/meds_reader_paper_code’s past year of commit activity
    C++ 0 0 0 0 Updated Nov 9, 2024
  • mimic_tutorial Public
    som-shahlab/mimic_tutorial’s past year of commit activity
    Python 3 0 0 0 Updated Oct 9, 2024
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