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License change for hhprefilter.h
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Add the BSD License to the prefilter (#123)
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martin-steinegger authored Mar 17, 2019
1 parent a5c48b8 commit 9aa96cb
Showing 1 changed file with 28 additions and 6 deletions.
34 changes: 28 additions & 6 deletions src/hhprefilter.h
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//////////////////////////////////////////////////////////////////////////////////////////
// The function swStripedByte contains code adapted from Mengyao Zhao
// The MIT License
// Copyright (c) 2012-1015 Boston College.
// Copyright (c) 2012-2015 Boston College.
// Permission is hereby granted, free of charge, to any person obtaining
// a copy of this software and associated documentation files (the
// "Software"), to deal in the Software without restriction, including
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// ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
// CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
// SOFTWARE.
//
// Reference:
// SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications i
// Mengyao Zhao , Wan-Ping Lee, Erik P. Garrison, Gabor T. Marth, PLOS ONE, December 4, 2013
// https://doi.org/10.1371/journal.pone.0082138


// The 2-clause BSD License
// Copyright 2006 Michael Farrar.
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
// "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
// LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
// A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
// HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
// SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
// OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.


class Prefilter {
public:
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