README.md

Genome_Assembly_lecture

Here you will find the info, code and presentations of Genome assembly lecture.

The protocols of this lecture are in Doc section

Multiple pdf files with slides for this lecture are in Slides

Repository cloning

If you have installed Git the easiest way to get this repository is by cloning it into your computer

$ git clone https://github.com/avera1988/Genome_Assembly_lecture.git

Another way is to download the zip master file

$ wget https://github.com/avera1988/Genome_Assembly_lecture/archive/master.zip
$ unzip master.zip

Some interesting papers about genome assembly strategies are in Literature

• Data example Raw_reads

All dependencies (i.e. FASTQC, TrimGalore, IDBA, SPADES, BUSCO and Bandage) used in this lecture can be local installed following the installingSoftwareBioconda instructions.