Adding support for Python 3.13 (#39)

.github/actions/build/action.yml

@@ -4,12 +4,12 @@ description: Build the package
 runs:
    using: "composite"
    steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: Set up Python
-      uses: actions/setup-python@v3
+      uses: actions/setup-python@v5
       with:
-        python-version: '3.12'
+        python-version: '3.13'
 
     - name: Install dependencies
       run: |
@@ -40,7 +40,7 @@ runs:
       shell: bash
 
     - name: Store the distribution packages
-      uses: actions/upload-artifact@v3
+      uses: actions/upload-artifact@v4
       with:
         name: python-package-distributions
         path: dist/

.github/actions/release/action.yml

@@ -0,0 +1,43 @@
+name: Release
+description: Create a GitHub release
+
+runs:
+    using: "composite"
+    steps:
+      - name: Extract version from pyproject.toml
+        id: get_version
+        run: |
+          version=$(grep -o 'version = "[^"]*"' pyproject.toml | sed -E 's/version = "(.*)"/\1/')
+          echo "VERSION=$version" >> $GITHUB_ENV
+        shell: bash
+      - name: Download all the dists
+        uses: actions/download-artifact@v4
+        with:
+          name: python-package-distributions
+          path: dist/
+      - name: Sign the dists with Sigstore
+        uses: sigstore/gh-action-sigstore-python@v3.0.0
+        with:
+          inputs: >-
+            ./dist/*.tar.gz
+            ./dist/*.whl
+      - name: Create GitHub Release
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        run: >-
+          gh release create
+          "v${{ env.VERSION }}"
+          --repo "$GITHUB_REPOSITORY"
+          --notes ""
+        shell: bash
+      - name: Upload artifact signatures to GitHub Release
+        env:
+          GITHUB_TOKEN: ${{ github.token }}
+        # Upload to GitHub Release using the `gh` CLI.
+        # `dist/` contains the built packages, and the
+        # sigstore-produced signatures and certificates.
+        run: >-
+          gh release upload
+          "v${{ env.VERSION }}" dist/**
+          --repo "$GITHUB_REPOSITORY"
+        shell: bash

.github/workflows/package_workflow.yml

@@ -1,27 +1,38 @@
 name: Python Package
-
 on:
     workflow_run:
         workflows: ["Tests"]
         types:
             - completed
-
 jobs:
     build_package:
         runs-on: ubuntu-latest
         steps:
             - uses: actions/checkout@v4
             - uses: ./.github/actions/build
-
     publish_package:
         needs: build_package
         runs-on: ubuntu-latest
         if: ${{ github.event.workflow_run.conclusion == 'success' }}
+        environment:
+            name: pypi
+            url: https://pypi.org/p/ikpls
+        permissions:
+            id-token: write
         steps:  
             - uses: actions/checkout@v4
-            - uses: ./.github/actions/publish
+            - uses: actions/download-artifact@v4
+              with:
+                name: python-package-distributions
+                path: dist/
+            - uses: pypa/gh-action-pypi-publish@release/v1
+    github_release:
+        needs: publish_package
+        runs-on: ubuntu-latest
         permissions:
+            contents: write
             id-token: write
-        environment:
-            name: pypi
-            url: https://pypi.org/p/ikpls
+        steps:
+            - uses: actions/checkout@v4
+            - uses: ./.github/actions/release
+

.github/workflows/pull_request_test_workflow.yml

@@ -12,11 +12,12 @@ on:
 jobs:
   test_package:
     runs-on: ${{ matrix.os }}
+    timeout-minutes: 60
     strategy:  
       fail-fast: false  
       matrix:  
         os: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
     steps:
       - uses: actions/checkout@v4
       - uses: ./.github/actions/test

.github/workflows/test_workflow.yml

@@ -11,12 +11,13 @@ on:
 
 jobs:
     test_package:
-        runs-on: ${{ matrix.os }}  
+        runs-on: ${{ matrix.os }}
+        timeout-minutes: 60
         strategy:  
             fail-fast: false  
             matrix:  
                 os: [ubuntu-latest, windows-latest, macos-latest]
-                python-version: ["3.9", "3.10", "3.11", "3.12"]
+                python-version: ["3.10", "3.11", "3.12", "3.13"]
         steps:
             - uses: actions/checkout@v4
             - uses: ./.github/actions/test

.readthedocs.yaml

@@ -2,9 +2,9 @@
 version: 2
 
 build:
-  os: ubuntu-22.04
+  os: ubuntu-24.04
   tools:
-    python: "3.12"
+    python: "3.13"
 
 # Build documentation in the "docs/" directory with Sphinx
 sphinx:

pyproject.toml

@@ -1,22 +1,22 @@
 [tool.poetry]
 name = "ikpls"
-version = "1.2.5"
+version = "1.2.5.post10"
 description = "Improved Kernel PLS and Fast Cross-Validation."
-authors = ["Sm00thix <oleemail@icloud.com>"]
-maintainers = ["Sm00thix <oleemail@icloud.com>"]
+authors = ["sm00thix <oleemail@icloud.com>"]
+maintainers = ["sm00thix <oleemail@icloud.com>"]
 license = "Apache-2.0"
 readme = "README.md"
 homepage = "https://ikpls.readthedocs.io/en/latest/"
-repository = "https://github.com/Sm00thix/IKPLS"
+repository = "https://github.com/sm00thix/ikpls"
 
 [tool.poetry.dependencies]
-python = ">=3.9, <3.13"
+python = ">=3.10, <3.14"
 numpy = ">=1.26.3"
-jax = "^0.4.20"
-jaxlib = "^0.4.20"
-scikit-learn = "^1.5.0"
-tqdm = "^4.66.1"
-joblib = "^1.3.2"
+jax = ">=0.5.0"
+jaxlib = ">=0.5.0"
+scikit-learn = ">=1.5.0"
+tqdm = ">=4.66.1"
+joblib = ">=1.3.2"
 
 [build-system]
 requires = ["poetry-core"]