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sigven committed Feb 20, 2024
1 parent fb63d12 commit 2d83111
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9 changes: 5 additions & 4 deletions pcgrr/DESCRIPTION
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Expand Up @@ -2,7 +2,7 @@ Package: pcgrr
Type: Package
Title: Personal Cancer Genome ReporteR
Version: 1.4.1.9001
Date: 2024-12-18
Date: 2024-02-18
Authors@R:
c(person(given = "Sigve",
family = "Nakken",
Expand All @@ -18,9 +18,10 @@ Maintainer: Sigve Nakken <sigven@ifi.uio.no>, Peter Diakumis <peterdiakumis@gmai
URL: https://github.com/sigven/pcgr,
https://sigven.github.io/pcgr/
BugReports: https://github.com/sigven/pcgr/issues
Description: Functions, tools and utilities for the generation of clinical cancer genome reports with PCGR.
This R package is an integrated part of the PCGR workflow (https://github.com/sigven/pcgr),
it should thus not be used as a stand-alone package.
Description: Functions, tools and utilities for the generation of clinical
cancer genome reports with PCGR. This R package is an integrated part of
the PCGR workflow (https://github.com/sigven/pcgr), it should thus not be
used as a stand-alone package.
License: MIT + file LICENSE
biocViews:
Imports:
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3 changes: 3 additions & 0 deletions pcgrr/R/input_data.R
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Expand Up @@ -455,6 +455,9 @@ load_dna_variants <- function(
)
}

## Assign each variant a tier according to
## ACMG/AMP guidelines for clinical actionability
## of somatic variants
if (variant_origin == "Somatic") {
results <- pcgrr::assign_acmg_tiers(
vartype = vartype,
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