DESCRIPTION

Type: Package
Package: ggcoverage
Title: Visualize Genome/Protein Coverage with Various Annotations
Version: 1.4.1
Authors@R: c(
    person("Yabing", "Song", , "songyb0519@gmail.com", role = c("aut", "cre", "cph")),
    person("Michael", "Jahn", , "jahn@mpusp.mpg.de", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0002-3913-153X"))
  )
Maintainer: Yabing Song <songyb0519@gmail.com>
Description: Visualize coverage tracks from genomics, transcriptomics
    or proteomics data. The package contains functions to load data from 'BAM',
    'BigWig', 'BedGraph', 'txt', or 'xlsx' files, create genome/protein coverage
    plots, and add various annotations including base and amino acid
    composition, GC content, copy number variation (CNV), genes, transcripts,
    ideograms, peak highlights, HiC contact maps, contact links and protein
    features. It is based on and integrates well with 'ggplot2'.
License: MIT + file LICENSE
URL: https://showteeth.github.io/ggcoverage/,
    https://github.com/showteeth/ggcoverage
BugReports: https://github.com/showteeth/ggcoverage/issues
Imports: 
    BiocParallel,
    Biostrings,
    dplyr,
    GenomeInfoDb,
    GenomicAlignments,
    GenomicRanges,
    ggh4x,
    ggpattern,
    ggplot2,
    ggrepel,
    grDevices,
    gridExtra,
    IRanges,
    methods,
    patchwork,
    rlang,
    Rsamtools,
    rtracklayer,
    scales,
    stats,
    utils
Suggests: 
    BiocStyle,
    BSgenome.Hsapiens.UCSC.hg19,
    ggbio,
    ggforce,
    graphics,
    HiCBricks,
    htmltools,
    knitr,
    openxlsx,
    rmarkdown
VignetteBuilder: 
    knitr
biocViews:
Encoding: UTF-8
RoxygenNote: 7.3.2