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inshenwei356/unikmer (press backspace or delete to remove)

现在在 ARM 处理器上的 Conda 还无法通过 conda install -c bioconda unikmer 安装。原因可能是还没有在 Conda 中设置 osx-arm64 的支持。看了一下 https://github.com/shenwei356/unikmer/releases/tag/v0.20.0 ,软件平台式支持的。希望添加一下 macOS 版本。
  • gaospecial
  • Opened 
    on Nov 11, 2024
  • #31

I have a fasta file containing multiple sequences, and want to generate kmers for each of the sequences separately. Does unikmer has such a function?
  • gaospecial
  • Opened 
    on Nov 15, 2023
  • #30

Many unikmer commands output gzipped files. But uniqs/map don t. Could you enable the --compact flag for this command to output gzipped output?
  • gaospecial
  • Opened 
    on Nov 13, 2023
  • #29

Amazing tool! Exactly what I was looking for, and performing smoothly. (Is the tool published -I could not find much online?) I am using unikmer as outlined in this workflow: https://www.biostars.org/p/475263/ ...
  • sihellem
  • Opened 
    on Nov 11, 2023
  • #28

Hi, I have 5 genome sequences. I was to find regions common among the four but either present is very dissimilar to the 5th one. Is there any way to do it? Thanks
  • sanjaysingh765
  • Opened 
    on Apr 12, 2023
  • #27

- [x] a table summaring information/requirement of input/output files - sorted - flag consistency - [x] count: add more information, suggestion.
doc
  • shenwei356
  • Opened 
    on Apr 9, 2022
  • #25

I have split this package into several repositories: - kmers, a package of kmer (sketch) related operations. - unik provides k-mer serialization methods for the package. - bio/sketches provides ...
  • shenwei356
  • Opened 
    on Nov 8, 2021
  • #24

Hi, Very cool tool, and in go-lang! I would suggest adding some instructions on how to use hash-based mer operations. For example when specifying minimizers, syncmers, or k 32 (I think), one needs to ...
  • jelber2
  • 4
  • Opened 
    on Aug 10, 2021
  • #23

https://www.biostars.org/p/113640/#424280
  • shenwei356
  • 1
  • Opened 
    on Jun 8, 2021
  • #22

Hi, Thanks a lot for your work on unikmer. At the moment, it works great for 64 bit architectures, but seems to fail on 32-bit ones -- reason being 1 32 - 1 directly being used here which results in a: ...
  • nileshpatra
  • 1
  • Opened 
    on Feb 28, 2021
  • #21
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