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@shenmengyuan
shenmengyuan committed Aug 29, 2019
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Binary file modified Datasets/An_overview_of_analysis_pipeline_to_metagenome.png
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2 changes: 1 addition & 1 deletion Datasets/env.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
id T PH TP TN area average water depth volume water level
id WT PH TP TN area average water depth volume water level
DCL-1 22.13 8.45 0.544 5.815 308.6 4.4 11.69 1887.4
DCL-2 21.8 8.63 0.351 4.816 308.6 4.4 11.69 1887.4
XYL-1 25.08 8.88 0.468 5.181 34.7 7 1.84 1722
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120 changes: 110 additions & 10 deletions Datasets/kaiju_all_lake_phylum_count.txt
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Original file line number Diff line number Diff line change
@@ -1,5 +1,15 @@
a-DCL-1 61314977 Cyanobacteria
a-DCL-1 12200013 Proteobacteria
a-DCL-1 6152309 Alphaproteobacteria
a-DCL-1 3778875 Betaproteobacteria
a-DCL-1 1285912 Gammaproteobacteria
a-DCL-1 378867 Deltaproteobacteria
a-DCL-1 128190 Oligoflexia
a-DCL-1 60200 Hydrogenophilalia
a-DCL-1 31751 Acidithiobacillia
a-DCL-1 21035 Epsilonproteobacteria
a-DCL-1 8413 Candidatus Muproteobacteria
a-DCL-1 4641 Zetaproteobacteria
a-DCL-1 628 Candidatus Lambdaproteobacteria
a-DCL-1 2319693 Bacteroidetes
a-DCL-1 333376 Actinobacteria
a-DCL-1 328951 Planctomycetes
Expand Down Expand Up @@ -154,7 +164,17 @@ a-DCL-1 17 Candidatus Jacksonbacteria
a-DCL-1 9 Candidatus Veblenbacteria
a-DCL-1 7 Candidatus Poribacteria
a-DCL-2 93220444 Cyanobacteria
a-DCL-2 16205598 Proteobacteria
a-DCL-2 7387125 Betaproteobacteria
a-DCL-2 5239247 Alphaproteobacteria
a-DCL-2 1952604 Gammaproteobacteria
a-DCL-2 607860 Deltaproteobacteria
a-DCL-2 328423 Oligoflexia
a-DCL-2 37010 Hydrogenophilalia
a-DCL-2 34090 Epsilonproteobacteria
a-DCL-2 22249 Acidithiobacillia
a-DCL-2 15288 Candidatus Muproteobacteria
a-DCL-2 8744 Zetaproteobacteria
a-DCL-2 945 Candidatus Lambdaproteobacteria
a-DCL-2 8034416 Bacteroidetes
a-DCL-2 6197434 Actinobacteria
a-DCL-2 3020301 Planctomycetes
Expand Down Expand Up @@ -309,7 +329,17 @@ a-DCL-2 15 Candidatus Veblenbacteria
a-DCL-2 9 Candidatus Jacksonbacteria
a-DCL-2 7 Nanoarchaeota
b-XYL-1 26046402 Cyanobacteria
b-XYL-1 15915679 Proteobacteria
b-XYL-1 8252972 Alphaproteobacteria
b-XYL-1 5440909 Betaproteobacteria
b-XYL-1 1321462 Gammaproteobacteria
b-XYL-1 306046 Deltaproteobacteria
b-XYL-1 75717 Oligoflexia
b-XYL-1 42049 Hydrogenophilalia
b-XYL-1 25127 Acidithiobacillia
b-XYL-1 21154 Epsilonproteobacteria
b-XYL-1 8821 Candidatus Muproteobacteria
b-XYL-1 4908 Zetaproteobacteria
b-XYL-1 603 Candidatus Lambdaproteobacteria
b-XYL-1 3944495 Bacteroidetes
b-XYL-1 981310 Firmicutes
b-XYL-1 659637 Gemmatimonadetes
Expand Down Expand Up @@ -463,7 +493,17 @@ b-XYL-1 7 Candidatus Brennerbacteria
b-XYL-1 5 Candidatus Poribacteria
b-XYL-1 1 Candidatus Jacksonbacteria
b-XYL-2 157171993 Cyanobacteria
b-XYL-2 9556218 Proteobacteria
b-XYL-2 4840335 Alphaproteobacteria
b-XYL-2 3006735 Betaproteobacteria
b-XYL-2 1130119 Gammaproteobacteria
b-XYL-2 197233 Deltaproteobacteria
b-XYL-2 53690 Oligoflexia
b-XYL-2 18019 Epsilonproteobacteria
b-XYL-2 14572 Hydrogenophilalia
b-XYL-2 11428 Acidithiobacillia
b-XYL-2 4018 Candidatus Muproteobacteria
b-XYL-2 2952 Zetaproteobacteria
b-XYL-2 529 Candidatus Lambdaproteobacteria
b-XYL-2 3497890 Bacteroidetes
b-XYL-2 2972518 Actinobacteria
b-XYL-2 923037 Planctomycetes
Expand Down Expand Up @@ -617,7 +657,17 @@ b-XYL-2 9 Candidatus Jacksonbacteria
b-XYL-2 7 Candidatus Parvarchaeota
b-XYL-2 5 Nanoarchaeota
b-XYL-2 2 Candidatus Veblenbacteria
c-EL-1 26088887 Proteobacteria
c-EL-1 10737345 Betaproteobacteria
c-EL-1 6939590 Alphaproteobacteria
c-EL-1 5474940 Gammaproteobacteria
c-EL-1 1135542 Deltaproteobacteria
c-EL-1 88084 Oligoflexia
c-EL-1 46521 Epsilonproteobacteria
c-EL-1 43654 Hydrogenophilalia
c-EL-1 19110 Acidithiobacillia
c-EL-1 9263 Zetaproteobacteria
c-EL-1 9144 Candidatus Muproteobacteria
c-EL-1 1231 Candidatus Lambdaproteobacteria
c-EL-1 12382675 Actinobacteria
c-EL-1 5099213 Cyanobacteria
c-EL-1 4866776 Planctomycetes
Expand Down Expand Up @@ -772,7 +822,17 @@ c-EL-1 104 Candidatus Parvarchaeota
c-EL-1 39 Candidatus Veblenbacteria
c-EL-1 38 Candidatus Brennerbacteria
c-EL-1 26 Candidatus Jacksonbacteria
c-EL-2 23208201 Proteobacteria
c-EL-2 10671582 Betaproteobacteria
c-EL-2 7875428 Alphaproteobacteria
c-EL-2 2854948 Gammaproteobacteria
c-EL-2 809327 Deltaproteobacteria
c-EL-2 114559 Oligoflexia
c-EL-2 50974 Epsilonproteobacteria
c-EL-2 40633 Hydrogenophilalia
c-EL-2 26632 Acidithiobacillia
c-EL-2 13430 Candidatus Muproteobacteria
c-EL-2 12182 Zetaproteobacteria
c-EL-2 1990 Candidatus Lambdaproteobacteria
c-EL-2 22112859 Actinobacteria
c-EL-2 16558761 Cyanobacteria
c-EL-2 7365877 Bacteroidetes
Expand Down Expand Up @@ -927,7 +987,17 @@ c-EL-2 84 Candidatus Parvarchaeota
c-EL-2 46 Nanoarchaeota
c-EL-2 32 Candidatus Jacksonbacteria
c-EL-2 18 Candidatus Veblenbacteria
d-FXL-1 28800519 Proteobacteria
d-FXL-1 13657006 Alphaproteobacteria
d-FXL-1 12755388 Betaproteobacteria
d-FXL-1 1555579 Gammaproteobacteria
d-FXL-1 232359 Deltaproteobacteria
d-FXL-1 37595 Epsilonproteobacteria
d-FXL-1 29463 Oligoflexia
d-FXL-1 22039 Hydrogenophilalia
d-FXL-1 16558 Acidithiobacillia
d-FXL-1 7059 Zetaproteobacteria
d-FXL-1 6685 Candidatus Muproteobacteria
d-FXL-1 1189 Candidatus Lambdaproteobacteria
d-FXL-1 26673521 Actinobacteria
d-FXL-1 12326926 Bacteroidetes
d-FXL-1 7571480 Verrucomicrobia
Expand Down Expand Up @@ -1082,7 +1152,17 @@ d-FXL-1 50 Candidatus Fraserbacteria
d-FXL-1 38 Candidatus Brennerbacteria
d-FXL-1 25 Candidatus Poribacteria
d-FXL-1 3 Candidatus Veblenbacteria
d-FXL-2 14204215 Proteobacteria
d-FXL-2 5638918 Alphaproteobacteria
d-FXL-2 5613020 Betaproteobacteria
d-FXL-2 1996187 Gammaproteobacteria
d-FXL-2 349877 Deltaproteobacteria
d-FXL-2 56533 Oligoflexia
d-FXL-2 26090 Epsilonproteobacteria
d-FXL-2 20290 Hydrogenophilalia
d-FXL-2 12114 Acidithiobacillia
d-FXL-2 6726 Zetaproteobacteria
d-FXL-2 6513 Candidatus Muproteobacteria
d-FXL-2 1072 Candidatus Lambdaproteobacteria
d-FXL-2 13725938 Actinobacteria
d-FXL-2 6483331 Cyanobacteria
d-FXL-2 3372730 Bacteroidetes
Expand Down Expand Up @@ -1237,7 +1317,17 @@ d-FXL-2 47 Candidatus Parvarchaeota
d-FXL-2 40 Candidatus Jacksonbacteria
d-FXL-2 24 Nanoarchaeota
d-FXL-2 4 Candidatus Veblenbacteria
e-LGL_1 36251693 Proteobacteria
e-LGL_1 20524711 Alphaproteobacteria
e-LGL_1 13346197 Betaproteobacteria
e-LGL_1 1322948 Gammaproteobacteria
e-LGL_1 294066 Deltaproteobacteria
e-LGL_1 146329 Oligoflexia
e-LGL_1 39385 Epsilonproteobacteria
e-LGL_1 12306 Hydrogenophilalia
e-LGL_1 9715 Acidithiobacillia
e-LGL_1 7439 Zetaproteobacteria
e-LGL_1 2896 Candidatus Muproteobacteria
e-LGL_1 780 Candidatus Lambdaproteobacteria
e-LGL_1 15962995 Actinobacteria
e-LGL_1 11758961 Verrucomicrobia
e-LGL_1 8581732 Bacteroidetes
Expand Down Expand Up @@ -1392,7 +1482,17 @@ e-LGL_1 43 Nanoarchaeota
e-LGL_1 8 Candidatus Jacksonbacteria
e-LGL_1 2 Candidatus Brennerbacteria
e-LGL_2 26007633 Actinobacteria
e-LGL_2 25656421 Proteobacteria
e-LGL_2 12589806 Alphaproteobacteria
e-LGL_2 10571348 Betaproteobacteria
e-LGL_2 1659380 Gammaproteobacteria
e-LGL_2 233811 Deltaproteobacteria
e-LGL_2 28359 Oligoflexia
e-LGL_2 25984 Epsilonproteobacteria
e-LGL_2 11572 Hydrogenophilalia
e-LGL_2 8470 Acidithiobacillia
e-LGL_2 5900 Zetaproteobacteria
e-LGL_2 3814 Candidatus Muproteobacteria
e-LGL_2 1023 Candidatus Lambdaproteobacteria
e-LGL_2 10386165 Bacteroidetes
e-LGL_2 9841737 Cyanobacteria
e-LGL_2 5381721 Verrucomicrobia
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