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Filter by "CHROM" isn't working #178

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jeromekelleher opened this issue Apr 2, 2025 · 1 comment
Open

Filter by "CHROM" isn't working #178

jeromekelleher opened this issue Apr 2, 2025 · 1 comment
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0.0.3

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@jeromekelleher
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Similar to the problem with filtering on the FILTER field, we're not converting the string CHR values to the integer contig values on comparison, so are not returning the correct set of records when filtering by CHROM.

e.g., this returns no records:

python3 -m vcztools view  -i 'CHROM="20"' vcz_test_cache/sample.vcf.vcz/
@jeromekelleher jeromekelleher added the bug Something isn't working label Apr 2, 2025
@jeromekelleher jeromekelleher added this to the 0.0.2 milestone Apr 2, 2025
@jeromekelleher jeromekelleher mentioned this issue Apr 4, 2025
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@jeromekelleher
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Alleviated in #188 by removing support for strings

@jeromekelleher jeromekelleher removed the bug Something isn't working label Apr 4, 2025
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